Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1618 ATGGCGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCTCAGGCGGCGAACAAGATCTGCGTTGACTGCTCCCAGAAGAACCCGCAGTGGGCATCCGTCTCGTACGGCGTCTTCATGTGTCTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTCCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCCGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTCACTAAATACAACACCAACGCCGCCGCCGTCTACCGCGACCGGATCCAGGCCATTGCCGACGGCCGTCCCTGGCGAGATCCGCCGGTAGTGAAGGAAAACCTCGCAGCAGGCAAGGGGAAACCGCCGCTGACGCAGACGCGAAGAGCTAGCGGGGGAGGATGGGACGATTGGGACAACGAGGGGAGTTCAGCGGACTTCCGGAGCAGGTCAACCGGGGACTTCAGTAGCTTGAACGGCGCGGGCGCACCGGCGAGGTCGAGGTCGACGGAGGACATCACGCGGTCGCAGCTGGAGGCGTCGGCGGCGAACAAGGAAAGCTTCTTCGCGAGGAAGATAGCGGAGAACGAGTCGCGGCCTGAGGGGCTTCCGCCGTCTCAGGGAGGGAAGTTCGTAGGGTTCGGGTCCAGTCCGCCGCCTCAGCGAAGGAACGATGTTCAACACGATTATTTATCTGTCGTTTCGCAGGGGATTGGGAAATTGTCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCAGCTAATGTTGTTCAGGCTGGCACGAAGGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCACAAGGTCAATGAAACTGTCACTGTTGTCACTCAAAAGACGTCAGAGATAGGACAGAGGACTTGGGGCATAATGAAAGGAGTTATGGCCATGGCCTCCCAGAAGATCGAGGAGTACACTAGAGATGATCCGAACTGGAAGACTGATAACTGGCAACGAAATGACAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGCTTGAATTCTTCTCCTGGAAGAGACCAATCTTCATCAGGGCAATATAAAACTCATAGCTCAAGCTCTTTGGATGATTGGGACCACCGAGATAGCAGGAAGGAAGTACCAGCTAAAGGAACAGCTCCCTATTCATCAGGTGGACAGTCTAGTACCTACAACTCAAGCTCTTGGGATGATTGGGAACACACAGATTCTAGAAAGCAAGAACCAGCTAAAGCAGCAGCTCCTCATAATAATGATGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATCATTTTTACCAAGATGCGTCTAACAAGAAAGGTGTTGGCCATAATGGAAAATCGGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1449 0.5369 MAAASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLAAGKGKPPLTQTRRASGGGWDDWDNEGSSADFRSRSTGDFSSLNGAGAPARSRSTEDITRSQLEASAANKESFFARKIAENESRPEGLPPSQGGKFVGFGSSPPPQRRNDVQHDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTRDDPNWKTDNWQRNDSDRNGYYQDFNQQNKGLNSSPGRDQSSSGQYKTHSSSSLDDWDHRDSRKEVPAKGTAPYSSGGQSSTYNSSSWDDWEHTDSRKQEPAKAAAPHNNDDWAGWDNAKDDGFDHFYQDASNKKGVGHNGKSDGTWTEGGFL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1618 482 MobiDBLite consensus disorder prediction 161 197 - -
Pvu7g1618 482 MobiDBLite consensus disorder prediction 402 418 - -
Pvu7g1618 482 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Pvu7g1618 482 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Pvu7g1618 482 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Pvu7g1618 482 MobiDBLite consensus disorder prediction 330 482 - -
Pvu7g1618 482 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Pvu7g1618 482 MobiDBLite consensus disorder prediction 419 434 - -
Pvu7g1618 482 MobiDBLite consensus disorder prediction 443 458 - -
Pvu7g1618 482 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Pvu7g1618 482 CDD ArfGap_ArfGap1 4 118 - -
Pvu7g1618 482 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Pvu7g1618 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 402 482 IPR044519 GO:0005096|GO:0016192
Pvu7g1618 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 400 IPR044519 GO:0005096|GO:0016192
Pvu7g1618 482 MobiDBLite consensus disorder prediction 344 380 - -
Pvu7g1618 482 MobiDBLite consensus disorder prediction 119 197 - -
Pvu7g1618 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Pvu7g1618 482 MobiDBLite consensus disorder prediction 211 239 - -
Pvu7g1618 482 MobiDBLite consensus disorder prediction 381 396 - -
Pvu7g1618 482 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
Pvu7g1618 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 402 482 - -
Pvu7g1618 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1618 Pvu-Chr7 38261335 38265910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1618 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 3.24e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1618 K12492 - gmx:100806519 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1618 7 38261335 38265910 Pvu7g1618 7 38261335 38265910 ECH
Pvu1g1757 1 43235276 43239596 Pvu7g1618 7 38261335 38265910 PCT