Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1606 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGAGGACGACGAAGAATTCCCAATTCCCGTTTCAAAGAAACCCTCCATGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGTCAGGTTGTGATGCACAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGCCTTCCGGCGGAGGCGACGGCGTCATTCCGGCCAGGGAGATTCGATCTTCTGAACACGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTCGATCATCACGATTTCTGCGCCGACATGCTCAATCCGCCGACAAACGCAATAGCGAGCCAGAGCCACAACAGCGCCGCCATACAATCCTCCATTCGCACGACGGAGCTTCGGCATCCGGCTCCTCGGCCGCCGATTCCTCCGTCTCGGCTGCCGGTGCCTGCGGCAAAAAGGATGCAGAATTTCGCGCACTTCTCGAAGCAAGGCAATGCGTCGTCGAGTTCGAAGGCCGCGGCGGCGCAGCCGACGATGGTGGATTCGTGCGATACGCCGGTTGCGACGGCGGAGCTTGGTGAAACCGGCCGCGCGAGCGTGACTGCTGCCGATGCAGGTAAGGCGGCAGAGTCTGGAGGAAGGGAGGCGGCGACGTGCGATTTGACGGTGACGTCATCTCCTGGCGGTTCAAGCGGGAGCGCGGAACCGGTTCAGAAGGAAGTGGACCGGAAGAGGAAGGGGAGAGAAGCGGAGGAATCGGAGTTTCAGAGCGAGGACGTCGATTTTGAATCTCCGGAAGCTAAAAAACATGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCCGAGAGGAGGCGTCGAGATAGAATTAATGAGAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCGCATTTGGGACCGAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCCCCTGATTCATCCAGAATGAAAGCACCAAATCAGTCAGATAATAATATGCTTAACGCACTTGGTACACAAGGTCCAGATCAATCACATATCCCAAACTTCACTGATCCTTATCAACAATACGTCGGCCTCCAACAGGTGCAGTTACAATTGATGCAGGTAAAGTTGTCCTTAATGCTATGTCTATTTTCTCGGTTCTTTTTCTTTCGACGGGGTGGGGGATTTAAGCTACCTGAGGGACATCATATTCCAGCCACCGTTACATATCATCTTCTTTAG 1554 0.5122 MNHCVPDFEIQMEDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMHSQNHRPLRKPPHTLPSGGGDGVIPAREIRSSEHENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADMLNPPTNAIASQSHNSAAIQSSIRTTELRHPAPRPPIPPSRLPVPAAKRMQNFAHFSKQGNASSSSKAAAAQPTMVDSCDTPVATAELGETGRASVTAADAGKAAESGGREAATCDLTVTSSPGGSSGSAEPVQKEVDRKRKGREAEESEFQSEDVDFESPEAKKHGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMKAPNQSDNNMLNALGTQGPDQSHIPNFTDPYQQYVGLQQVQLQLMQVKLSLMLCLFSRFFFFRRGGGFKLPEGHHIPATVTYHLL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1606 517 MobiDBLite consensus disorder prediction 231 246 - -
Pvu7g1606 517 MobiDBLite consensus disorder prediction 274 310 - -
Pvu7g1606 517 MobiDBLite consensus disorder prediction 250 266 - -
Pvu7g1606 517 MobiDBLite consensus disorder prediction 207 310 - -
Pvu7g1606 517 Gene3D - 289 352 IPR036638 GO:0046983
Pvu7g1606 517 Pfam Helix-loop-helix DNA-binding domain 298 344 IPR011598 GO:0046983
Pvu7g1606 517 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 479 - -
Pvu7g1606 517 SMART finulus 300 349 IPR011598 GO:0046983
Pvu7g1606 517 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 479 IPR031066 -
Pvu7g1606 517 CDD bHLH_AtPIF_like 294 357 - -
Pvu7g1606 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Pvu7g1606 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 372 IPR036638 GO:0046983
Pvu7g1606 517 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1606 Pvu-Chr7 38056417 38060898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1606 1 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.379 9.42e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g1606 HLH 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1606 - - pvu:PHAVU_007G156200g 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1606 7 38056417 38060898 Pvu7g1606 7 38056417 38060898 ECH
Pvu1g1750 1 43134636 43140822 Pvu7g1606 7 38056417 38060898 PCT