Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1560 ATGCAGACACAAGAGGAATTACAAGAGGTTTCCAAGGATCAGACGATGATCAAAGGCAAGCGCAACAAGCGTGAAAGGGCACCATCCCCTCCTAGGTTTGCCAAGCCCACTTCAACCTCAACTAGCACTAACAATTCCATTGATAGTGCCACAACCTCAACCACCACCAACACCCCAATTGAATCAATAGAAGAAGAAGACATGGTGAATTGTCTCATTCTCCTAGCTCAAGGCACACACCACGTGGCAGCAGCTACACCAGATCAAAATATCAACTACAAAAGGTCAACAAACCCTCGAGTCTTCCGGTGCAAGACTTGCAACAAATGCTTCCCTTCATTCCAATCGCTTGGAGGACACAGAACCAGCCACAGGAAGCCCAAGGAAAACAGCACTTCTGTAGAAGAAGCTCCTACTTTTGTTAGAGACAGTGATCCCACCACAAGCACCACTCTCTCCTTGAAAACACCAAATAGGGTTAATAGTTTGACTAGCACCAGCACTGTCGCCGTGAGAGTTCACCGGTGTTCCACCTGTTATGCTGAATTCTCTTCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCACAGAAATCTTGTGAATGCTTCTTCAATGACGTCCATGAGTGGTGATGGTGGTGGTAGCCAAGAATATCAAGGAGCTAAGAAACCCTTGAATTTGGACTTGAATCTTCCAGCAGCACCAGAGGAAGATCAAGGAGAATCCAAGTTTTCGTTTCAGCAAAGAGAAAACGTCATTGTCTTCTCTAATTCTTTGGTGAATTGCAATTACTGA 795 0.4629 MQTQEELQEVSKDQTMIKGKRNKRERAPSPPRFAKPTSTSTSTNNSIDSATTSTTTNTPIESIEEEDMVNCLILLAQGTHHVAAATPDQNINYKRSTNPRVFRCKTCNKCFPSFQSLGGHRTSHRKPKENSTSVEEAPTFVRDSDPTTSTTLSLKTPNRVNSLTSTSTVAVRVHRCSTCYAEFSSGQALGGHMRRHRNLVNASSMTSMSGDGGGSQEYQGAKKPLNLDLNLPAAPEEDQGESKFSFQQRENVIVFSNSLVNCNY* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1560 264 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Pvu7g1560 264 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 14 263 - -
Pvu7g1560 264 Pfam C2H2-type zinc finger 101 127 - -
Pvu7g1560 264 Pfam C2H2-type zinc finger 173 197 - -
Pvu7g1560 264 SMART c2h2final6 174 196 IPR013087 -
Pvu7g1560 264 SMART c2h2final6 102 124 IPR013087 -
Pvu7g1560 264 SUPERFAMILY beta-beta-alpha zinc fingers 100 196 IPR036236 -
Pvu7g1560 264 Gene3D Classic Zinc Finger 100 196 - -
Pvu7g1560 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 196 IPR013087 -
Pvu7g1560 264 PANTHER ZINC FINGER PROTEIN ZAT5 14 263 - -
Pvu7g1560 264 MobiDBLite consensus disorder prediction 133 151 - -
Pvu7g1560 264 MobiDBLite consensus disorder prediction 11 30 - -
Pvu7g1560 264 MobiDBLite consensus disorder prediction 33 63 - -
Pvu7g1560 264 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Pvu7g1560 264 MobiDBLite consensus disorder prediction 1 63 - -
Pvu7g1560 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Pvu7g1560 264 MobiDBLite consensus disorder prediction 116 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1560 Pvu-Chr7 37352490 37353705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1560 16 264 C2H2 Transcription Factor Family AT5G03510 36.071 8.31e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g1560 zf-C2H2_6 4.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1560 - - pvu:PHAVU_007G151700g 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1560 7 37352490 37353705 Pvu1g1877 1 44582723 44583794 ECH
Pvu7g1560 7 37352490 37353705 Pvu11g0887 11 8345523 8347015 ECH
Pvu7g1560 7 37352490 37353705 Pvu7g1560 7 37352490 37353705 ECH
Pvu7g1560 7 37352490 37353705 Pvu5g1346 5 35542895 35543785 ECH
Pvu1g1877 1 44582723 44583794 Pvu7g1560 7 37352490 37353705 PCT