Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1555 ATGGTCCAAACGACCTACATTTTCCTCTTCTTCTCCGTTCTGCCCTCATTTTTACCTCATGGAACAGCAAAGCTCAATCTCACTCTTCCAGGGCAACATCCAGACCCGGAAGCTGTTGCCACAGAAGTTCATAGGAGGGTGAATGCTTCAATGGGAAGAAGGGAAATGCTGGGGTTGTCAGAGAAAGAGGTGGCGTCATGTCTCACAGGTAACCCCATTGATGATTGTTGGAAGTGTGACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCTGATTGTGGAATTGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGGCAATTTTACATAGTCACTGATTCATCTGATGAGGACGCTGTGAACCCAAAACCAGGAACACTTAGGTATGCAGTGATACAGAATGAGCCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAATAGCTACAAAACCATTGATGGGCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGCATCACTCTTCAGTATATTAGCAATGTCATTATACACAACATTCACATCCACCATTGCCATCCCTCTGGTAACACTAACGTGCGGTCGAGTCCAGAGCACTACGGCTACCGAACGGAATCAGACGGCGACGGAGTCTCGATCTTCTCGTCGCGCGACATCTGGATCGATCACTGCACGCTATCACGGTGCAAGGACGGTCTGATAGACGCGGTGATGGGTTCGACCGCAATAACGATCTCGAACAACCACTTTTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTGCCAGACTCGGCGATGCAGGTGACGATCGCGTTCAACCACTTCGGAGAGGATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGGTACATCCACGTCGTCAACAACGACTTCACGCGATGGGAGATGTACGCGATCGGGGGAAGTGGGAGGCCTACGATTAACAGCCAGGGAAACCGCTACACTGCGCCGGAGAATGCGTACGCGAAGCAGATTACCAAGAGGCTGGACGCCGGAGAAGGAGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGACGTGATGCTGAACGGCGCGTTTTTCGTGGCCTCAGGAGGTGAGACCGGAGCTGCCTACCAAAATGCGTACAGCGTTGAGCCTAAGAACGTGGATCGCATCTCGCTCCTCACCATGTCTGCTGGTGTTCTCGGCGTTGCAAGGGACAATAATCTGGGAATGTGGACGAGAGGACCCAACGATGGTGCAGTGTATTTTTCAGATACAGGTCCAGAATACACAGATGACATGTCTCGGAGTACAGTGCCGCTGCCACCTTCACCTACTTGCACTCTTCTATCTGCGTTTCTCGCTTTCTTCTGCCTCTTATTTCATACAAATTACCTTAACAACACTTCTATAGCAAATGAGTTGTAA 1458 0.5144 MVQTTYIFLFFSVLPSFLPHGTAKLNLTLPGQHPDPEAVATEVHRRVNASMGRREMLGLSEKEVASCLTGNPIDDCWKCDPDWANNRQRLADCGIGFGQNAKGGKGGQFYIVTDSSDEDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGVSIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEDLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGRPTINSQGNRYTAPENAYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGETGAAYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGPNDGAVYFSDTGPEYTDDMSRSTVPLPPSPTCTLLSAFLAFFCLLFHTNYLNNTSIANEL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1555 485 Pfam Pectate lyase 154 324 IPR002022 -
Pvu7g1555 485 Coils Coil 482 485 - -
Pvu7g1555 485 SMART amb_all 145 342 IPR002022 -
Pvu7g1555 485 Gene3D - 70 412 IPR012334 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Pvu7g1555 485 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Pvu7g1555 485 PANTHER PECTATE LYASE 18-RELATED 3 435 IPR045032 GO:0030570
Pvu7g1555 485 SUPERFAMILY Pectin lyase-like 58 389 IPR011050 -
Pvu7g1555 485 PANTHER PECTATE LYASE 3 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1555 Pvu-Chr7 37275737 37278530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1555 1 467 Polysaccharide Lyase AT3G53190 69.118 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1555 K01728 - gmx:100815062 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1555 7 37275737 37278530 Pvu7g1555 7 37275737 37278530 ECH
Pvu1g1873 1 44519548 44522188 Pvu7g1555 7 37275737 37278530 PCT