Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1550 ATGTCTACCTCTGCAGCTTCTCTTGCACTCCCCACTCTCACTCTCCGAACACGCTACCCTGCATCTTCTCCAAAATGTTTCTCCTCCTCTCTCTCCCTCACCCCTAATACCAAACCCATCTCCATTTCTAACGTTTTCCTAAAACCCACCTTATCCCTCTCCTCGCGCTTCCTTCCCCGCGTCGCTGTCTCCTCCGAGTACGACCAGGAAGAGGGCACCTTCAGCTCCGGCCAGAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGAAACCTTCCCTTCAGCGTAGACAGCGCGCAGCTCGCCGAGATCTTCGAGAATGCTGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACGACCGGGAGAAGCAGAGGATTTGGGTTTGTGACCATGTCTTCGGTTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCTTGAAAGTGAATGCTGGGCCACCTCCGGCTCGGAATGAGAGTACCTCTCGTTTTAGAAGTTCTCCCCCCAGAGGTGGTGGTGGTGATTTTTCAGATAGTGAAAACAAAGTCCATGTAAGTAATCTTGCTTGGGGTGTTGACAATGGAACACTGGAGTCATTCTTTGGGGAATACGGAAAGGTCCTGGAAGCAAGAGTAATCTATGACAGGGACAGTGGACGATCAAGAGGCTTTGGATTTGTTACTTACAGTAGTGCAGATGAGGTCAGCAGTGCAATTCAGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTCGCATTAGCTGATTCCAAGCCCAGGCGGCCTCGTGGATTTTAA 828 0.5097 MSTSAASLALPTLTLRTRYPASSPKCFSSSLSLTPNTKPISISNVFLKPTLSLSSRFLPRVAVSSEYDQEEGTFSSGQSFSPDLKLFVGNLPFSVDSAQLAEIFENAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALKVNAGPPPARNESTSRFRSSPPRGGGGDFSDSENKVHVSNLAWGVDNGTLESFFGEYGKVLEARVIYDRDSGRSRGFGFVTYSSADEVSSAIQSLDGVDLNGRAIRVALADSKPRRPRGF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1550 275 SMART rrm1_1 85 158 IPR000504 GO:0003723
Pvu7g1550 275 SMART rrm1_1 190 263 IPR000504 GO:0003723
Pvu7g1550 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Pvu7g1550 275 SUPERFAMILY RNA-binding domain, RBD 161 273 IPR035979 GO:0003676
Pvu7g1550 275 MobiDBLite consensus disorder prediction 156 187 - -
Pvu7g1550 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Pvu7g1550 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Pvu7g1550 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Pvu7g1550 275 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 270 - -
Pvu7g1550 275 CDD RRM_HP0827_like 85 158 - -
Pvu7g1550 275 PANTHER OS02G0815200 PROTEIN 1 270 - -
Pvu7g1550 275 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
Pvu7g1550 275 Gene3D - 186 275 IPR012677 -
Pvu7g1550 275 Gene3D - 64 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1550 Pvu-Chr7 37158885 37161507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1550 86 271 Eukaryotic Initiation Factors Gene Family AT4G34110 32.796 9.47e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1550 - - var:108324910 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1550 7 37158885 37161507 Pvu7g1550 7 37158885 37161507 ECH
Pvu1g1791 1 43613160 43621447 Pvu7g1550 7 37158885 37161507 PCT