Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1548 ATGGACGCAACGCCCAATGGAAAAGACGCTTTCTGCGTCACTGCCGCCAATGCCGCGGGGGACCCGCTCAACTGGGCCGCTGCGGCGGAGGCGCTCTCGGGCAGTCACCTCGACGAGGTCAAGCGCATGGTCGCCGAGTACCGCAAGCCCGCGGTGCGCCTCGGCGGTCAGACGCTCACCATCGCTCAGGTAGCGGCCACTGCGGCGCACGACCAGGGTCTCAAGGTGGAGCTGGCGGAGTCCGCCAGGGCCTGCGTCAAGGCCAGCAGTGACTGGGTGATGGAGAGCATGGACAAGGGGACTGACAGTTACGGTGTCACCACCGGGTTCGGTGCAACCTCCCACCGCCGTACCAAACAAGGTGGCGCCTTGCAGAAGGAGCTTATCAGGTTTTTGAATGCTGGGATATTTGGCAATGGTACAGAGTCCAACTGCACCCTACCCCACACTGCAACTAGAGCAGCTATGCTTGTGAGAGTGAACACTCTTCTCCAAGGGTACTCAGGAATTAGATTTGAAATTTTGGAGGCCATCACCAAGCTTTTGAACAACAACATTACTCCATGTTTGCCACTAAGGGGTACAATTACAGCATCTGGTGATCTTGTACCTTTGTCATACATTGCCGGTTTGCTAACTGGTAGGCCAAACTCCAAGGCTGTTGGTCCCTCTGGAGAGATTCTGAATGCTAAGGAAGCCTTTGAATTGGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGTCTTGCCCTTGTGAATGGAACGGCTGTTGGCTCTGGCTTGGCCTCTATTGTTCTCTTTGAAGCAAACATCCTTGCCGTCTTGTCTGAAGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGAAAGCCCGAGTTCACTGATCATTTGACTCATAAGCTAAAGCACCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAGAAACCCAAACAAGATCGCTATGCCCTTAGAACTTCACCCCAATGGCTTGGTCCTCAAATTGAAGTGATCAGGTTTTCTACCAAGTCAATTGAGAGGGAGATCAACTCAGTCAATGACAACCCTTTGATTGATGTGTCTAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGATAACACCCGTTTGGCTATTGCTTCAATTGGAAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAATAATGGGTTGCCTTCTAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTACTGCTCTGAACTCCAATATTTGGCTAACCCCGTAACCAGCCATGTCCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCTTTGGGATTGATTTCATCTAGGAAAACCAATGAGGCTATTGAGATCCTCAAGTTAATGTCTTCAACTTTCCTCGTTGCACTTTGCCAGGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTGAAGAATGTTGTGAGCCAGGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAACTCCACCCTTCAAGATTTTGTGAGAAAGACTTGTTGAAAGTTGTTGAAAGGGAGTACACATTTGCCTACATTGACGACCCTTGCAGTGGCACATACCCCTTGATGCAAAAACTAAGGCAAGTGCTTGTGGACTATGCATTGGCCAATGGAGAGAACGAGAAAAACTTGAACACGTCAATCTTCCAAAAGATTGCATCATTTGAGGAGGAGTTGAAGACCCTCTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAACGACCAATGTGCAATTCCCAACAAGATCAAGGATTGTAGATCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTAGGGACATCGTTGCTGACTGGTGAAAAGGTGATCTCACCGGGTGAAGAGTGTGACAAAGTGTTCAGTGCTATGTGCCAAGGAAAAATCATTGATCCTCTCTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAG 2139 0.4848 MDATPNGKDAFCVTAANAAGDPLNWAAAAEALSGSHLDEVKRMVAEYRKPAVRLGGQTLTIAQVAATAAHDQGLKVELAESARACVKASSDWVMESMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVEREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGENEKNLNTSIFQKIASFEEELKTLLPKEVEGARLAYENDQCAIPNKIKDCRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGAPLPIC* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1548 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Pvu7g1548 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Pvu7g1548 712 CDD PAL-HAL 57 522 IPR001106 -
Pvu7g1548 712 Gene3D - 12 258 IPR024083 -
Pvu7g1548 712 Gene3D - 525 646 IPR023144 -
Pvu7g1548 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 15 712 - -
Pvu7g1548 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pvu7g1548 712 Pfam Aromatic amino acid lyase 59 539 IPR001106 -
Pvu7g1548 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Pvu7g1548 712 PANTHER HISTIDINE AMMONIA-LYASE 15 712 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1548 Pvu-Chr7 37020027 37024239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1548 1 712 Monolignol Biosynthesis Gene Families AT2G37040 81.742 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1548 K10775 - gmx:100803857 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1548 7 37020027 37024239 Pvu1g1842 1 44144036 44144760 ECH
Pvu7g1548 7 37020027 37024239 Pvu7g0985 7 10062183 10065569 ECH
Pvu7g1548 7 37020027 37024239 Pvu7g1548 7 37020027 37024239 ECH
Pvu1g1843 1 44150743 44154391 Pvu7g1548 7 37020027 37024239 PCT