Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1533 ATGATTACGTTCATGGACTCAAAGGAGAAATCGAAGGAGGCGGAGAAGTGTTTGGATCCTCAACTATGGCATGCGTGTGCAGGTGGCATGGTGCAGATGCCAGCGGTGAACACCAAGGTCTATTACTTCCCTCAGGGCCATGCTGAACATGCATGTGGAGCGGTTAACTTCAGGACCTGTCCTAAGGTTTCGCCTTTGGTTCCATGCAGAGTGGCTTCCATCAAATACATGGCTGATCCTGAGACCGATGAGGTCTATGCCAAACTCAGGCTTGCTCCTATGAGCGTCAATGATGCTGATTATGACCGTGATGTTGTTGGACCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGGTTTTCTGTACCAAGGTACTGCGCTGAGACAATTTTCCCAAGGCTAGATTACTCGGCTGATCCTCCTGTTCAGAACATCCTTGCCAAGGATGTCCATGGAGAAACATGGAAATTTAGACACATCTACAGGGGCACGCCGAGGCGACATCTGTTGACCACTGGATGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCAGGAGACTCAATTGTGTTTTTGAGGGCGGAAAACGGGGATCTGTGTGTCGGGATTCGGCGAGCGAAGAAGGGGATTGGTGGAGGACCTGAGGGCTCCTCTGGGTGGAACCCTGCTGGAGGAAGTTGTCCTATGGCCTATGGTGGATTTTCACCTTTTCTGAGGGAGGAGGACAACAGAATCCTGAGAAATGGTAATATCAATGGGTTGAACCCAAGTGTGACTATGACGGGCAGAGGCAAAGTGCGACCAGAAGCTGTTGTTGAAGCTGCAAATCTCGCGGCCAATAAGCAACCATTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCGGAATTTTGTGTGAAGGCCCCACTAGTAGAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCACGGATAAGTTGGTTCATGGGAACGATTTCTTCGGTTCAGGTTGCCGATCCCCTTAACTGGCCTAACTCACCTTGGAGACTTCTCCAGGTGACATGGGATGAACCAGATTTACTTCAAAACGTGAGAAGGGTGAGCCCTTGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCATCTTTCCCCATTCTCGCCACCAAGGAAGAAATTGAGATTGCATCAACACCCAGATTTCCCCCTTGATGGCCAGATTCATTTGCCAACATTTTCCGGCAACCTTCTAGGTCCCAGCAACACCAACCAGTTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGTCTATCCATATCGGATCTCCACTTCAGTAAACTACATTCAGGTCTATTTCCTGCTGGTTTCCCGCCTCTTGATCACGCTGCTACGCCAATGAGAATCTCTAATAACCTCACATTGCAAAAGCCCACCATCAGTGAGAATGTCTCTTGCTTACTATCTATGGCAAATTCTACTCAATCTTCAAAGAAAATGGATGAAGGGAAGAAGACACCCCAGCTCGTGCTTTTCGGCCAAAAAATTCTCACCGAGCAGCAGATCTCTCTCAGCAGCTCCGTTGACACCTTCTCCCCAGTTCTTAACAGAAATTGTTCCTCCGATGGACATGCCGATAAAGTGGCTAATTTTTCTGATGGTTCTGGATCGGCTCTTCATCAGCATCAGCAGCAGCATGGCCAACACCAACACCAACACGAACGTTCCTCTTGTGAGAGGTTTCAGTGGTACAGGGATAACCCCCAAGAAACCGAGGCCGGTCTGGAGACTGGTCATTGTAAAGTTTTTATGGAGTCAGAAGATGTAGGAAGGACTATGGACCTCTCATTGCTTCGGTCCTATGATGAACTCTACAGAAGGCTGACAGACATGTTTGGCATAGAAAAATCTGAGATGTTAAGTCAGGTGCTCTATCGCGATTCAAATGGAGCTGTCAAACACATTGGTGATGAACCATTCAGTGACTTCATAAAATCAGCCAGGAGGTTGACTATTCTCATGGATTCTGGCAGCAACAATGTAGGAGTGTAG 2127 0.4819 MITFMDSKEKSKEAEKCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGAVNFRTCPKVSPLVPCRVASIKYMADPETDEVYAKLRLAPMSVNDADYDRDVVGPETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEGSSGWNPAGGSCPMAYGGFSPFLREEDNRILRNGNINGLNPSVTMTGRGKVRPEAVVEAANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLHQHPDFPLDGQIHLPTFSGNLLGPSNTNQFGCLPESTPAGMQGARHAHYGLSISDLHFSKLHSGLFPAGFPPLDHAATPMRISNNLTLQKPTISENVSCLLSMANSTQSSKKMDEGKKTPQLVLFGQKILTEQQISLSSSVDTFSPVLNRNCSSDGHADKVANFSDGSGSALHQHQQQHGQHQHQHERSSCERFQWYRDNPQETEAGLETGHCKVFMESEDVGRTMDLSLLRSYDELYRRLTDMFGIEKSEMLSQVLYRDSNGAVKHIGDEPFSDFIKSARRLTILMDSGSNNVGV* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1533 708 CDD B3_DNA 116 217 IPR003340 GO:0003677
Pvu7g1533 708 SMART B3_2 117 219 IPR003340 GO:0003677
Pvu7g1533 708 MobiDBLite consensus disorder prediction 570 602 - -
Pvu7g1533 708 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu7g1533 708 Gene3D - 620 706 - -
Pvu7g1533 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 699 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu7g1533 708 PANTHER AUXIN RESPONSE FACTOR 6 699 - -
Pvu7g1533 708 Gene3D - 323 397 - -
Pvu7g1533 708 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Pvu7g1533 708 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Pvu7g1533 708 Gene3D - 115 219 IPR015300 -
Pvu7g1533 708 ProSiteProfiles PB1 domain profile. 622 702 IPR000270 GO:0005515
Pvu7g1533 708 SUPERFAMILY DNA-binding pseudobarrel domain 110 218 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1533 Pvu-Chr7 36751509 36755450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1533 15 708 B3 DNA Binding Superfamily AT4G30080 56.879 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu7g1533 B3 3.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1533 - - gmx:100796522 1213.75