Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1495 ATGAGGGGAAGAAGCTACAGTTACAGTCCTTCACCTCCAAGGCATTATAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCCGTTACAGAGGACGTGATAGGGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACTGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTATGTGGACCCAGCTGATGCTGCGGATGCAAAACACCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTAGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGGGCAAGGGAACGGAGGAGGGATCGATCATATGATTACAGGGGATCGCCTCGAACCTATTCTCCTAGTCCAGACTATTCACCTCCTCCAAGACGAAGAAGACATTACAGATCAATCTCACCAAGGGTCAGAAAATATAGCGATGGATCATACTCTAGATCACCTTATGGGTCAAGAAGCCGCAGCAGAAGCAGGAGTTATAGCAGGAGCAGAAGTTACAGCAGGAGCTTGAGCCCAAGTCCTGAGTACTCTGGGTGA 630 0.4873 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGRDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRDRSYDYRGSPRTYSPSPDYSPPPRRRRHYRSISPRVRKYSDGSYSRSPYGSRSRSRSRSYSRSRSYSRSLSPSPEYSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1495 209 MobiDBLite consensus disorder prediction 118 209 - -
Pvu7g1495 209 MobiDBLite consensus disorder prediction 1 35 - -
Pvu7g1495 209 Gene3D - 32 146 IPR012677 -
Pvu7g1495 209 MobiDBLite consensus disorder prediction 169 209 - -
Pvu7g1495 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Pvu7g1495 209 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 207 - -
Pvu7g1495 209 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Pvu7g1495 209 MobiDBLite consensus disorder prediction 118 138 - -
Pvu7g1495 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Pvu7g1495 209 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 207 - -
Pvu7g1495 209 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1495 Pvu-Chr7 35983449 35990274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1495 38 207 Eukaryotic Initiation Factors Gene Family AT4G34110 23.295 2.80e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1495 K12900 - gmx:100816913 219.935