Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1478 ATGAAGTTCTGCAAGACCTACCAGCGATACATGCAAGGGCATGACCACAAGCTCCCTGCTGTTGGCTTCAAGAAGCTCAAAAAGATCATGAAAAGGTGCAGGAGAGCCTCCACAACCACCTGTCCTGATCATTGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAGATGTCAGACATAGTAGGATGCTTTAACCAGCGAGCGCAGAAATTGCTGGAAGTGCATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAAGGGATTAGGAATCATATTGGTCAAATCGAAGAAGGAAAAGATCTAGTCATATATGCACTCATAAATGCCATTGCAATTCGAAAAATATTAAAGAAATATGACAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCAAAAGTCCAGACCATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTTCTGAGCTTATTGCCTTACACATTAACTTGAGGGAAACAAAAGCCAAGCCAAGGGAGGTATCTGCATTGTTTCAAGGATGTTATCTAAGATTCAAAGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCTTCAAAATGGACATTAACCTAACATGCTCCATATGCTTGGATACAGTGTTTGATCCGGTTTCTCTGACGTGTGGTCACATATTCTGCTACTCCTGCGCTTGCTCAGCTGCATCAGTTACCATTGTTGATGGACTTAAGGCAGCAAAGTCCAGAGCAAAATGTGCTCTATGCCGACAGCAAGGAATTTACGAAGATGCTGTGCACTTGGAAGAATTGAATATTCTGCTAGGTCGAAGGTGCAAAGACTATTGGGAGGAAAGGCTTCAGATGGAAAGAACAGAGAGGGTTAAGCAAGTAAAGGAGCACTGGGAAACACAGTGTAGGGTGTTCGTAGGCATCTAA 942 0.4278 MKFCKTYQRYMQGHDHKLPAVGFKKLKKIMKRCRRASTTTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLEVHLASGFRKYFLMLKGKGIRNHIGQIEEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLSELIALHINLRETKAKPREVSALFQGCYLRFKDGKPSLTCELFDSFKMDINLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVTIVDGLKAAKSRAKCALCRQQGIYEDAVHLEELNILLGRRCKDYWEERLQMERTERVKQVKEHWETQCRVFVGI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1478 313 CDD SPX_BAH1-like 2 136 - -
Pvu7g1478 313 ProSiteProfiles Zinc finger RING-type profile. 209 258 IPR001841 -
Pvu7g1478 313 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Pvu7g1478 313 Pfam Zinc finger, C3HC4 type (RING finger) 207 260 - -
Pvu7g1478 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 311 IPR013083 -
Pvu7g1478 313 SUPERFAMILY RING/U-box 201 260 - -
Pvu7g1478 313 ProSiteProfiles SPX domain profile. 1 140 IPR004331 -
Pvu7g1478 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 313 IPR033326 -
Pvu7g1478 313 SMART ring_2 209 257 IPR001841 -
Pvu7g1478 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1478 Pvu-Chr7 35560971 35568442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1478 206 258 C3H Transcription Factor Family AT4G28270 37.931 3.93e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1478 K16275 - gmx:100803060 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1478 7 35560971 35568442 Pvu7g1478 7 35560971 35568442 ECH
Pvu7g1478 7 35560971 35568442 Pvu1g2141 1 47087911 47094231 PCT