Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1436 ATGGAAGCACCAGAGGAACTCTCTGTGGGGGGGTCCAAAGATCACACCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTGAGGCCACAATCCCCTATCCCCTTCGTCACTGCCAATTCCTCCACCGGAGAAGGAGAAGGAGAAGGACAAGATTGCTGCAATGTTGATGACAACACCAACACCACCACCAACAAAAATTATGATATTAATAACAACAACAACAACAGCTCTCCCACCACTTCTTCTGCAGGATTACAAGACAGCACTGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTCCTAGCACAAGGACAATCCCGGGAATCTCATAAACATGCCGAGGAAGATGTGGGCATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAAGCGGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCAATGATGGCCATTGGCCAAGAGAAGAAGCAGCAACACCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAATAAATCACCATTTTCCCTTCAACTCAATACAAAGGGCAATTTGTACAACAAGTCCAAGGTGCATGAGTGTTCCATCTGTGGTGCTGAATTCACATCGGGGCAGGCACTGGGAGGCCACATGAGACGCCACCGTGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATATGTTGAACTTGGAATTGGATCTCAATCTTCCTGCCCCCGAAGATGATCAAAGAGAATCCAAGTTTTCCTTCCAATCCAAGCAACAACAACAACATGGACAGAAACAACAGCAACAGCAGCAACAGCAACCACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1002 0.4731 MEAPEELSVGGSKDHTNIVKGKRTKRVRPQSPIPFVTANSSTGEGEGEGQDCCNVDDNTNTTTNKNYDINNNNNNSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESHKHAEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMMAIGQEKKQQHLLSSDEEEFQLKTNNKSPFSLQLNTKGNLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNMLNLELDLNLPAPEDDQRESKFSFQSKQQQQHGQKQQQQQQQQPPQTSLVLTAPALVDCHY* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1436 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Pvu7g1436 333 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Pvu7g1436 333 SUPERFAMILY beta-beta-alpha zinc fingers 145 243 IPR036236 -
Pvu7g1436 333 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Pvu7g1436 333 Gene3D Classic Zinc Finger 124 202 - -
Pvu7g1436 333 Gene3D Classic Zinc Finger 203 250 - -
Pvu7g1436 333 MobiDBLite consensus disorder prediction 284 321 - -
Pvu7g1436 333 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 333 - -
Pvu7g1436 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 243 IPR013087 -
Pvu7g1436 333 Pfam C2H2-type zinc finger 145 171 - -
Pvu7g1436 333 Pfam C2H2-type zinc finger 220 246 - -
Pvu7g1436 333 MobiDBLite consensus disorder prediction 295 321 - -
Pvu7g1436 333 SMART c2h2final6 146 168 IPR013087 -
Pvu7g1436 333 SMART c2h2final6 221 243 IPR013087 -
Pvu7g1436 333 MobiDBLite consensus disorder prediction 1 91 - -
Pvu7g1436 333 MobiDBLite consensus disorder prediction 33 86 - -
Pvu7g1436 333 PANTHER ZINC FINGER PROTEIN ZAT5 12 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1436 Pvu-Chr7 34354381 34356274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1436 1 333 C2H2 Transcription Factor Family AT5G04390 44.149 1.80e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g1436 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1436 - - vra:106771093 514.612