Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1414 ATGAACAGTAGCACCACCAATAAAGAGCATGGTGGGTTCACATATGGAGTAGCTTTTGTAATTGGGTCTGTGGTCTTACTTCTCACGGTGGCTTTTGCATGTGTGCGCCTTCTCATAGCTCGAGGTCCCAACATCCTCAATAGTTTGGCTGGAATTCCACAATCTCCTCCCACAAGAGATGAAGACTCAGCTGAACAAGGCCTTGCCCTAAGGCTTCATCATATTGACACAAGTTTTGAAAGCTATCCCAAACTTCTATACTCCCAAGTAGAGAAGGGTTCAAGTTCAAGCAACATCTGTTCTTCTAGCTGCTCCATCTGCTTAGGGGACTACAAAGAGGGTGACATGTTGAGGTTACTTCCTCACTGTCACCATGTTTTCCACCTTGCTTGCCTTGATCCATGGCTTAGGTTGCATCCAACTTGTCCCATATGTAGAAAATCATCTCTTCAACCTCCCTCCAATTAA 468 0.4509 MNSSTTNKEHGGFTYGVAFVIGSVVLLLTVAFACVRLLIARGPNILNSLAGIPQSPPTRDEDSAEQGLALRLHHIDTSFESYPKLLYSQVEKGSSSSNICSSSCSICLGDYKEGDMLRLLPHCHHVFHLACLDPWLRLHPTCPICRKSSLQPPSN* 156
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1414 155 Pfam Ring finger domain 103 146 IPR001841 -
Pvu7g1414 155 SUPERFAMILY RING/U-box 103 152 - -
Pvu7g1414 155 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pvu7g1414 155 SMART ring_2 104 145 IPR001841 -
Pvu7g1414 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 152 - -
Pvu7g1414 155 CDD RING-H2_PA-TM-RING 108 146 - -
Pvu7g1414 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 150 IPR013083 -
Pvu7g1414 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 152 IPR045899 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu7g1414 Pvu-Chr7 33752895 33753698 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1414 5 154 C3H Transcription Factor Family AT5G06490 34.545 9.06e-28 100
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1414 - - var:108343169 259.996