Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1401 ATGGCAGGGAACTTCAGATTCACAATGGATCAGAAGGACATTGTTAGATTCTTGACTACAACTATTGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAGCAAAGAGCTCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGAAGGAAGTTGTGATAAGGACACTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGCTTGCCAGGCTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACACCTCAATCTATCCTACTTATGGAAGTTGAGGAGCAACATTCAAAGTTGTGTTCTCCATGCTCTTGAGATGTTCACAGTTGACCCTTTTTTTTCACGGATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGTTGGTATTCTGAAGAGAGGCATAGGCTTATGATGGAAGTGATGCCGGACTCTAGTGATTTGTCCTTTACAGCTGATTTTGATCGATTTTTTAACGAGTCTTTGATATTTTCTATGCGGCCACATGAGTTAGACAAATTGCAAAAGCTGGAGCAGCTTTATGCAGAATCATTGGATGAAAACACACGACTATACGCAAAATATTATAAGGATTGCATGAATTCTGATTCCACTTCATCAGGCAAGAAGGCAGCTCATATGTTGCCCATTGCTGAGCCACCAAGGACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCGGGGTTCTCTTTGACAACAAGATCTAAAGATGGTGTAAATGAAACAATCAGCAGAGAGAACTCAACTTCCAGCCAATCAAAGGTGGAGAAACCATCCATATGGGGTGCTAAGGAGAGTATCAATGAGGAGGATGAGAATGAAGATGATTCAGATTCTGAGTTTGATGATGCTTCTGTGAATTCAGAAAGAAAAAACAATATTTTATCACAAGGAACGAAGACGGTCAAGGATGAGGATATTGAGCCAAAGGTGCCTCTATCAAACCGTAAGAGTCAGATTCATTCTCCTGATATCTTCTCTCCCTTGGATTCTCCAAAAGCAGGTCCAAATAATTCATCCACAAATCCTGATACAAACCGTAAAAGAGAACCCAAATATCTTCGCTTACTGTCTACTCGTTTGAGGGACTCAACTACTTCTGACTCTTTATCATCATCTCTGGAATTGAGCACTGATCACATTCTCAACTCTGATAAAGAAATAATGGGCTTGAAGAATATTAAGAGGAAAAACAATAACCAAACACCAAGTATGAATAATGACAGTGGGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTGATGACGAGGAAAATCAAAGCTTCACTACGTTGCCTAAGTTAGAGAAGCTGGCAATTGGATCAAAACCACCTAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTGACCCTTGAAACAGGGCAGACATATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGTAACACGACATGCCCCATCACACGACAGCCTCTATCAGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAGAATCCCGAACTGGCGCAAGAACTCTCGAATTCTAACACTCCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTCCAAATGCTCTCCATTACACAGAGAACAACTGATTCACCAGGTCTGAAGAACAAAGAAAATTATATTAGACAAAGGAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTAGAAACAATTTTGAATTCCTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCAAGAATGTGAAGAAGCTGTATTGGAAATAGCAAGATTATGGAAAGATTCAAAGACTGATCCTCAGATTCATGCTTATTTATCAAAGCCAACAATCATAAGTGGTTTGGTGGAAATACTTTCAGCTTCTATGAATAGAGAAGTTTTGAGAACATCAATTTATATACTTTCTGAACTGATTTTTTTAGATGAAAGTGTTGGAGAAACACTTAACAGTGTTGATTCTGATTTTGATTGCTTGGCTACTCTGCTTAAGAACGGTTTAGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTCGGCACATGAACTTGTACCATCTCTTGTGCAAGTGATTCAGAATGAAAACGAGGCATCAGATGATTTTCAGTTAGTTATAGACCCCAAAGATGCAGCGATAGCAATTCTTGAGCAAATTTTAATTGGAGGGGATGAATATGGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGAATTCCATGCTTAGCGAAGTATCTAGAGAGGATGGAGGGAAGGAGGTGTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAGGTTGCAAGAGTTTGATAGCCAACACAATTGAATTGTCTCCTGTCCTTGAATTATTTCACGCTGGAAATGATAGTGTGCGAGGCATCTGCGTGGAGTTTCTCTCAGAACTGGTTCAACTGAATAGAAGGACAGTCTGCAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTTAGTACGATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCTAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGGAAGATGAGCATTTACAGGGAAGAAGCGATAGAGATACTTATAGAAGCACTATGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTGGATGCTTTACTATTTCTTATTGGACAAGTAACCACCTCTGGAAAGTCGTACACTGAAGCTTGGTTACTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTACTTAAGCCTGGCCAGTTGGGACAGTATGACAATGAATCAATGGAAACAATGGAGGATGAAAAAGATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCTTTAAAGATGGCAAAATCGTGCCTTGTTCTTGTCGCATGGCTCACACACATGCTCAATACTCTTCCTGATACCGGCATAAAGAATGTTGCTCGCAAATCCTTGCTTGAAGAACTTATGAATGTCCTGCTATCATCTAAGAACCTGGAGGAGATGATATTGGCTAGCCTAGCCTTGAAAACTTTCATTGGTGATCCAATTACTCAAGAAGCACTTAGAGCTTATGCTAAAAGAATCTATAGAACCATGAGGAAGCTAAAGAGATATTCAACAGTAGCAGTTGATATTACGAAAGCTTTACTAAACTTAAACTCTATTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTGGAGTTAGATTTGAGTTCAAATGGAGAGGTGCTTTCTTTGCACTACATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCTCTATGTTCTTCAGATGATAGACTATACAGTGGTTCCTTAGACAAAACCATCCGGGTTTGGACAATCAAACCAGATGAGATTAAATGTATAGATGTTCATGACGTAAAGGAGCCGGTGTATGAGCTGACAGCCAATGCCAAATTGGCATGCTATGTATCTCAAGGAAGTGGAGTTAAGGTTTTTAATTGGTCAGAGGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTAGCTCTTGCTGGGGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCCAAGAATACGTCAAACTCATTCTTCTCCGGAACAAGAAAGTTGTTGGGAAAACAAACCATATACACCCTTCGAATTCATGATGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCTGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCAACAGGACTTGATATCCATCGTGTAGCTATTAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATCGAGGTTTGGCTAAGAGATAAGCTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCATTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCTTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4476 0.3999 MAGNFRFTMDQKDIVRFLTTTIDSFIQDRLINKEQRAQHKEQCAERLAAEEGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRSNIQSCVLHALEMFTVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVMPDSSDLSFTADFDRFFNESLIFSMRPHELDKLQKLEQLYAESLDENTRLYAKYYKDCMNSDSTSSGKKAAHMLPIAEPPRTPLHELSRSVPDFVKFGPILPKSAGFSLTTRSKDGVNETISRENSTSSQSKVEKPSIWGAKESINEEDENEDDSDSEFDDASVNSERKNNILSQGTKTVKDEDIEPKVPLSNRKSQIHSPDIFSPLDSPKAGPNNSSTNPDTNRKREPKYLRLLSTRLRDSTTSDSLSSSLELSTDHILNSDKEIMGLKNIKRKNNNQTPSMNNDSGNSLGLNDSSLCESDDEENQSFTTLPKLEKLAIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELAQELSNSNTPRGSSCSPSAKDFQMLSITQRTTDSPGLKNKENYIRQRSNRFMRVSVATSPTSVLSQAAVETILNSLKPYISSLCTSENLQECEEAVLEIARLWKDSKTDPQIHAYLSKPTIISGLVEILSASMNREVLRTSIYILSELIFLDESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSAHELVPSLVQVIQNENEASDDFQLVIDPKDAAIAILEQILIGGDEYGRSLNALSVISENGIPCLAKYLERMEGRRCVVSILLCCMQAEKGCKSLIANTIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAIEILIEALWQKDFSNTQMKALDALLFLIGQVTTSGKSYTEAWLLKIAGFDQPYNALLKPGQLGQYDNESMETMEDEKDAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLNTLPDTGIKNVARKSLLEELMNVLLSSKNLEEMILASLALKTFIGDPITQEALRAYAKRIYRTMRKLKRYSTVAVDITKALLNLNSIDVTELWSCKEVVELDLSSNGEVLSLHYMNGQVLSGHSDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSDDRLYSGSLDKTIRVWTIKPDEIKCIDVHDVKEPVYELTANAKLACYVSQGSGVKVFNWSEAPKLINFNKYVKCLALAGDKLYCGCSGYSIQEVDLSKNTSNSFFSGTRKLLGKQTIYTLRIHDDFLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRVAINSDFIFAGTKFGTIEVWLRDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD* 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1401 1491 Gene3D - 645 1017 IPR011989 -
Pvu7g1401 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1457 1491 IPR001680 GO:0005515
Pvu7g1401 1491 SUPERFAMILY ARM repeat 664 1013 IPR016024 -
Pvu7g1401 1491 MobiDBLite consensus disorder prediction 338 352 - -
Pvu7g1401 1491 Gene3D - 1187 1491 IPR015943 GO:0005515
Pvu7g1401 1491 MobiDBLite consensus disorder prediction 308 421 - -
Pvu7g1401 1491 Pfam U-box domain 517 587 IPR003613 GO:0004842|GO:0016567
Pvu7g1401 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1225 1238 IPR001680 GO:0005515
Pvu7g1401 1491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 598 IPR013083 -
Pvu7g1401 1491 SMART WD40_4 1200 1238 IPR001680 GO:0005515
Pvu7g1401 1491 SMART WD40_4 1243 1280 IPR001680 GO:0005515
Pvu7g1401 1491 SMART WD40_4 1448 1489 IPR001680 GO:0005515
Pvu7g1401 1491 MobiDBLite consensus disorder prediction 462 499 - -
Pvu7g1401 1491 PRINTS G protein beta WD-40 repeat signature 1225 1239 IPR020472 -
Pvu7g1401 1491 PRINTS G protein beta WD-40 repeat signature 1267 1281 IPR020472 -
Pvu7g1401 1491 PRINTS G protein beta WD-40 repeat signature 1476 1490 IPR020472 -
Pvu7g1401 1491 Coils Coil 225 245 - -
Pvu7g1401 1491 SUPERFAMILY WD40 repeat-like 1218 1490 IPR036322 GO:0005515
Pvu7g1401 1491 CDD RING-Ubox_PUB 520 562 IPR045210 -
Pvu7g1401 1491 MobiDBLite consensus disorder prediction 464 499 - -
Pvu7g1401 1491 SUPERFAMILY RING/U-box 515 588 - -
Pvu7g1401 1491 ProSiteProfiles U-box domain profile. 515 590 IPR003613 GO:0004842|GO:0016567
Pvu7g1401 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1250 1282 IPR001680 GO:0005515
Pvu7g1401 1491 SMART Ubox_2 519 583 IPR003613 GO:0004842|GO:0016567
Pvu7g1401 1491 MobiDBLite consensus disorder prediction 308 327 - -
Pvu7g1401 1491 Pfam WD domain, G-beta repeat 1251 1279 IPR001680 GO:0005515
Pvu7g1401 1491 Pfam WD domain, G-beta repeat 1459 1488 IPR001680 GO:0005515
Pvu7g1401 1491 Pfam WD domain, G-beta repeat 1220 1238 IPR001680 GO:0005515
Pvu7g1401 1491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1457 1491 - -
Pvu7g1401 1491 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1491 - -
Pvu7g1401 1491 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1491 - -
Pvu7g1401 1491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1250 1282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1401 Pvu-Chr7 33656099 33663968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1401 516 587 U-box Gene Family AT2G28830 47.222 2.10e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1401 - - gmx:100776142 2605.86