Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1397 ATGGCCACAGAAGAAGAAATTTCAACTTTGAAACTGATGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCGCCAACCTCATTCCTGTAAAAGTTGAAGACTCCTCATCAGAACTTGATTTCGGTTCAAACTTCTCAGAACAAAGCAGCTTCTACAGGTTTCTAGAATGCTTTGATTTTGAAGCAGACAAAGAAGTGACAGGTCTCACTTTTCATCATAAAATCCAAAACTCCATTGCTACAAGTCCACTCCAGAATTCTGATTTGGCAGATCCAACTGTGTCAGTGAAAAAGGAAGCAACATGTTGTTATGAGACAAGGCGTTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATCCGTGACCCCAAAAGGAAAGGGAGCAGGGTGTGGCTAGGCACGTATGACAGTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCAGAAGGCTGTATTGAATTTCCCCTTGGAGGCTGGAAAGTCTCATCCGGAGCCCAACAGTTGTGGCAGGAAAAGAAGAAGAGAGTGCACAACAGTTGCCACAACTTCAAGTCATGTATGTCATGAAAAATAA 612 0.4428 MATEEEISTLKLMRQYLLGDISDPFLANLIPVKVEDSSSELDFGSNFSEQSSFYRFLECFDFEADKEVTGLTFHHKIQNSIATSPLQNSDLADPTVSVKKEATCCYETRRYRGVRRRPWGKFAAEIRDPKRKGSRVWLGTYDSEIDAAKAYDCAAFRMRGQKAVLNFPLEAGKSHPEPNSCGRKRRRECTTVATTSSHVCHEK* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1397 203 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Pvu7g1397 203 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Pvu7g1397 203 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Pvu7g1397 203 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Pvu7g1397 203 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Pvu7g1397 203 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Pvu7g1397 203 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Pvu7g1397 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 190 - -
Pvu7g1397 203 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Pvu7g1397 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1397 Pvu-Chr7 33583547 33584310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1397 107 187 AP2-EREBP Transcription Factor Family AT5G07580 71.605 3.46e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g1397 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1397 - - pvu:PHAVU_007G135900g 413.305