Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1376 ATGTCGGATGCGCCAGCCAGCCCGAGTCATGAGAGTGGGGGCGAGCAGAGCCCGCGCGGTTCCTCCTCTGGGGCCAGGGAGCAGGACCGCTACCTTCCTATTGCCAACATCAGCCGCATCATGAAGAAGGGTCTTCCTCCCAACGGCAAGATTGCTAAGGACGCCAAAGATACCATGCAAGAGTGTGTTTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACTATTAATGGAGACGATTTGTTATGGGCAATGGCCACTTTAGGTTTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTGGCAAGGTACAGAGAGGCGGAGGGTGACACCAAAGGATCTGCAAGAGGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGCTCACTGAACTATATTAGTTTGCAGGTGCAACCACAACATATGGTTTTGCCTTCAATGCAAAGCCATGAATAG 522 0.5038 MSDAPASPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREAEGDTKGSARGGDGSARPDQVGLAGQNSQLVHQGSLNYISLQVQPQHMVLPSMQSHE* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1376 173 MobiDBLite consensus disorder prediction 1 24 - -
Pvu7g1376 173 MobiDBLite consensus disorder prediction 119 138 - -
Pvu7g1376 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu7g1376 173 MobiDBLite consensus disorder prediction 1 30 - -
Pvu7g1376 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pvu7g1376 173 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pvu7g1376 173 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pvu7g1376 173 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pvu7g1376 173 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu7g1376 173 Gene3D Histone, subunit A 18 153 IPR009072 GO:0046982
Pvu7g1376 173 PANTHER BNAA04G21250D PROTEIN 7 152 - -
Pvu7g1376 173 SUPERFAMILY Histone-fold 28 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1376 Pvu-Chr7 33168415 33174405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1376 9 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.000 2.75e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu7g1376 CBFD_NFYB_HMF 2.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1376 K08065 - gmx:100779577 335.495