Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1340 ATGGATTCGGATCAAGGAAAATTATTCATCGGTGGGATTTCGTGGGACACTACGGAGGACAAGCTCAAGGAGCATTTTGGCAACTACGGCGACGTTTTGAGCACTTCTGTTATGCGGGAGAAGAACACTGGCAAGCCCAGGGGCTTTGGTTTCGTCGTCTTCGCGGATCCCACCATTCTCGATAGGGTTCTCGAGGATAAACATGTCATCGATGGCAGAACGGTTGATGCCAAAAAGGCTTTCTCAAGAGAGGATCAACAAATTTCTGTCACCTCGAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGAAATGGAGGAAACATCAGAACTAAAAAGATATTTGTCGGAGGACTGCCTCCTACCCTGACTGAAGAAAAATTTCGTCAGTACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGGCGGCCACGAGGATTTGGATTTATTTCATTTGATACTGAGGAGGCCGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTTCTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGTAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGCGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTATAGTGCTCCAGGGTATGGTTATGGTCCGGCTAATAATGGTATTGGGTATGGTGCATATGGAAGTTATGGCGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACCTATGGAAATCCTAATGTTCCTAATGCTGCTTATGCTGGTGGTCCACCAGGAGGCCCAAGGAGTTCATGGCCTGCTCAGGCACCTTCTGGTTATGGATCTATGGGCTATGGGAATACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTGGCGGTGGTCCTGGTTCAGCAACTGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGGAGCCAAGGTTATGGATATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCTTATAATTCAAGTGCATATGGCACTGTTGGTGGACGAACTGGGAGTGCTCCAAACAATAGTGCTAGCGGTCCTGGTGGGGGTGAACTAACAAGTAGTGGTGGCAGTGGTAGCTACATGAGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCAGAACAAACACATGCATCTGGAAATTATGGAACCCCGCAGGGAAATGGTGGGCAGGTTGGTTACGGTGGTGGCTACGGTGGTGCTCAGTCTCGACAAGCCCAACAACAGTAA 1428 0.4867 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPTILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGSGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGSQGYGYGGYGGYGGSDSSYNSSAYGTVGGRTGSAPNNSASGPGGGELTSSGGSGSYMSGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1340 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pvu7g1340 475 MobiDBLite consensus disorder prediction 432 454 - -
Pvu7g1340 475 MobiDBLite consensus disorder prediction 382 475 - -
Pvu7g1340 475 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Pvu7g1340 475 MobiDBLite consensus disorder prediction 382 424 - -
Pvu7g1340 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Pvu7g1340 475 Gene3D - 108 231 IPR012677 -
Pvu7g1340 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 473 - -
Pvu7g1340 475 Gene3D - 4 88 IPR012677 -
Pvu7g1340 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pvu7g1340 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Pvu7g1340 475 SMART rrm1_1 113 185 IPR000504 GO:0003723
Pvu7g1340 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pvu7g1340 475 MobiDBLite consensus disorder prediction 337 356 - -
Pvu7g1340 475 MobiDBLite consensus disorder prediction 84 107 - -
Pvu7g1340 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pvu7g1340 475 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Pvu7g1340 475 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1340 Pvu-Chr7 31138411 31141819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1340 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.378 1.21e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1340 K14411 - gmx:100786882 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1340 7 31138411 31141819 Pvu7g1340 7 31138411 31141819 ECH