Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1314 ATGGATCTTGCAAGCAGAAGACACTTGATTTATGAGTCACAATCACAAGCACTTTCTCCGGTCACAAGTCCAGGAGGTTCATTCTTTCATCCTCATCAACATTCTTCTAGCACTAGTTTTCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTCATCAAATGCTGCCTCAATTGGCACAGAATCGATATTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACAGAAACTCGTGGACTAGATGAGGCAATGATCCGGTTAATCCCAGTGATTCAATACAAGACACAAGGGGATGGAGACTCTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAGGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACATGGAGCAGCTTCTTGCCCTAAGATCTTCTTCCCCTCCGCATCAGACTCCACCTCGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGCAATATCCATGATAGAAATCAAAATTTGCAAGAGAGAGGAAATGGTTTGGAGTTACCATTACCAACATCTCATATTAGTTCTTCTACGCCAAGGAAATTGGAACATGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACGAGCATGGGAGATGAGTGTATTGATATTAGAGCAAAAGATAACCAGTTCTCAGTGCAACCAATCCGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAGGAAGCTCTGAGGCTGCAGAACAGGCAAGTCAATGAAGTCAGCTCCACTGAAGGCTGCAGTGGTAGTGGTAATATTAGAGTCAAGAGGTCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1062 0.4303 MDLASRRHLIYESQSQALSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTETRGLDEAMIRLIPVIQYKTQGDGDSGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHMEQLLALRSSSPPHQTPPRENLIGGDEDFVVIELGNIHDRNQNLQERGNGLELPLPTSHISSSTPRKLEHGNVQKKAMKLHKVTSMGDECIDIRAKDNQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSSTEGCSGSGNIRVKRSFFSFGHGSRSRSSVQPVSLEP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1314 353 SMART ring_2 126 167 IPR001841 -
Pvu7g1314 353 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Pvu7g1314 353 SUPERFAMILY RING/U-box 120 174 - -
Pvu7g1314 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 173 IPR013083 -
Pvu7g1314 353 PANTHER RING-H2 FINGER PROTEIN ATL16 27 352 - -
Pvu7g1314 353 CDD RING-H2_PA-TM-RING 125 168 - -
Pvu7g1314 353 PANTHER RING-H2 FINGER PROTEIN ATL16 27 352 IPR044600 GO:0016567|GO:0016740
Pvu7g1314 353 Pfam Ring finger domain 125 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1314 Pvu-Chr7 27736926 27738596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1314 31 353 C3H Transcription Factor Family AT1G04360 54.648 2.63e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1314 - - gmx:100775286 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1314 7 27736926 27738596 Pvu7g1314 7 27736926 27738596 ECH