Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1308 ATGGAACGTGGGGTTCTTGATGGTATCATCAATAAGCTGCTCGAAGTCAGAGGCAGACCCGGCAAGCAGGTGCAACTTTCTGAGCCTGAAATCAAGCAGCTTTGTCTTGTCTCCAGGGATATCTTCTCCAACCAGCCCAACCTCTTGGAACTCGACGCACCACTCAAGATCTGTGGAGATATCCATGGTCAATATTCTGACCTTCTGCGACTTTTTGAGTACGGTGGGTTGCCTCCTCGTTCTAATTACTTATTTTTAGGGGACTATGTTGATCGTGGGAAGCAAAGCTTGGAGACTATATGTCTCCTTCTGGCTTATAAAATAAAATATCCTAATAACTTCTTTCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGCATCTATGGATTTTATGATGAGTGTAAACGAAGATTCAATGTGAAGCTTTGGAAAGTGTTCACAGAATGCTTCAACTGTTTGCCAGTGGCAGCTCTAATTGATGAAAAAATACTCTGCATGCATGGTGGACTCTCTCCTGAGTTACACAATTTAAATCAGATAAAGAGTTTGCCGCGTCCTTCTGAAGTGCCCGAAACTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGCAGTGACATTCGGGGTTGGGGAGAAAATGAACGTGGAGTTTCCTATACATTTGGTGTTGACAGGGTGACAGAATTCCTTCAGAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTTGTGGAAGACGGATATGAATTCTTTGCTGACAGACAACTTGTAACTATCTTCTCGGCACCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCAATGATGACTGTTGATGAGTCACTCGTTTGCTCTTTTCAAATATTGAAGCCTGTAGAAAAAAAGCCTAGTATATTTCGTTTTGGGAGCACTACCACAGTTAAGCCTAGTACTCCAACAAAAGCCAAGCAATCATTTTTTGGTGCTAAAGCATGA 984 0.4289 MERGVLDGIINKLLEVRGRPGKQVQLSEPEIKQLCLVSRDIFSNQPNLLELDAPLKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRFNVKLWKVFTECFNCLPVAALIDEKILCMHGGLSPELHNLNQIKSLPRPSEVPETGLLCDLLWSDPSSDIRGWGENERGVSYTFGVDRVTEFLQKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMTVDESLVCSFQILKPVEKKPSIFRFGSTTTVKPSTPTKAKQSFFGAKA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1308 327 SMART pp2a_7 26 296 IPR006186 GO:0016787
Pvu7g1308 327 Pfam Calcineurin-like phosphoesterase 56 246 IPR004843 GO:0016787
Pvu7g1308 327 SUPERFAMILY Metallo-dependent phosphatases 18 302 IPR029052 -
Pvu7g1308 327 CDD MPP_PP1_PPKL 5 294 - -
Pvu7g1308 327 Pfam Serine-threonine protein phosphatase N-terminal domain 6 51 IPR031675 -
Pvu7g1308 327 Gene3D - 2 304 IPR029052 -
Pvu7g1308 327 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Pvu7g1308 327 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Pvu7g1308 327 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Pvu7g1308 327 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1308 Pvu-Chr7 26815679 26823010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1308 33 239 Calmodulin-binding Proteins AT5G63870 33.468 3.60e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1308 K06269 - gmx:100791655 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1112 6 22253051 22257634 Pvu7g1308 7 26815679 26823010 ECH
Pvu7g1308 7 26815679 26823010 Pvu7g1308 7 26815679 26823010 ECH