Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1297 ATGCCACCGAAGTTTGATCCCTTGCAGGTGGTGGACATGATCGTTCGCGTCACCAGTGGTGAGGTGGGCACTGGGAGTTCTCTCGCACCAAAGATCGATCCGAGACTGGACTGGAAGGGCCTCCATATGATGATGAAACTCACCGTTCAGAACCACCAGGCGAAGGTGACAGTGGTGCGCTCCGCCGTCGCACTTGTCATCAATGCACTTAAAGAGCCCGAGAGGGACAGGAAAAAGAACAAGAATGTAAAGCACAATGGAAACATCACCCTAAACGACGTGATTGAGATCGCGAGGGTGATGAGGTCGCACTCCATGGCGAAGGATCTCAGTAGAAGCATCAAAGAGATCCTCAGGACTTGTGTGTCTGTTGGGTGCACCGTCAATGGGAAAGACCCCAAGGATCTGCAACAAGAGATTTCCGATGGTGACATTGAGGTTCCTCTTAAATGA 453 0.5143 MPPKFDPLQVVDMIVRVTSGEVGTGSSLAPKIDPRLDWKGLHMMMKLTVQNHQAKVTVVRSAVALVINALKEPERDRKKNKNVKHNGNITLNDVIEIARVMRSHSMAKDLSRSIKEILRTCVSVGCTVNGKDPKDLQQEISDGDIEVPLK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1297 150 PANTHER 60S RIBOSOMAL PROTEIN L12 1 34 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g1297 150 PANTHER 60S RIBOSOMAL PROTEIN L12 37 149 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g1297 150 Gene3D - 61 148 IPR036769 -
Pvu7g1297 150 Gene3D - 1 36 IPR036796 -
Pvu7g1297 150 Pfam Ribosomal protein L11, RNA binding domain 63 128 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pvu7g1297 150 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 71 IPR036796 -
Pvu7g1297 150 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 34 - -
Pvu7g1297 150 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 37 149 - -
Pvu7g1297 150 SMART rl11c 13 129 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g1297 150 SUPERFAMILY Ribosomal protein L11, C-terminal domain 62 133 IPR036769 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1297 Pvu-Chr7 25888263 25888758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1297 1 148 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 65.244 6.72e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1297 K02870 - gmx:100527860 230.335