Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1285 ATGAATTCAGAGAAGCCAGTCAGCCCTGAGAATTTAAGTGATGAAAATGATCAAGAAGAAGCACATGATGACACTGGTGGAACCAAACGCTCTTATGAGTGCACATTCTGCAAAAGAGGCTTCACAAACGCTCAGGCATTAGGGGGTCACATGAATATCCATAGGAGAGACAGGGCCAAGGCCAAGCAATTAACACTTGACGCTTCACCTTCAATGAACAAATTCAACAGTGATGAATCCATAGTCTTTCCTTTTGTCTCAGAAACTTTAAACCAACCCGCAAGGCCTTACTCCATTTTGGAGTCTCAGAGGAACTGTGACATGCAATTTCATCCACCAGCACCTGCAAGTGCCTTTTATTATGAGCTTTACGACCCGAGGTCTCGATCTTTAACTTTTAACCAAGAGCTTGGCGGTGCCAACTTGAGTCTCCAAATTGGTCAAACTCATCATGTGGATGATAACATTCATCAAGTCAGGAGAGGAAACCAGAAAGATAATGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 543 0.4365 MNSEKPVSPENLSDENDQEEAHDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRRDRAKAKQLTLDASPSMNKFNSDESIVFPFVSETLNQPARPYSILESQRNCDMQFHPPAPASAFYYELYDPRSRSLTFNQELGGANLSLQIGQTHHVDDNIHQVRRGNQKDNEVDLELRLGHDPY* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1285 180 PANTHER OS07G0101800 PROTEIN 13 179 - -
Pvu7g1285 180 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Pvu7g1285 180 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 179 - -
Pvu7g1285 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pvu7g1285 180 Pfam C2H2-type zinc finger 32 56 - -
Pvu7g1285 180 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Pvu7g1285 180 Gene3D Classic Zinc Finger 13 83 - -
Pvu7g1285 180 MobiDBLite consensus disorder prediction 1 29 - -
Pvu7g1285 180 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1285 Pvu-Chr7 25165822 25166895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1285 25 180 C2H2 Transcription Factor Family AT3G53820 33.333 4.44e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g1285 zf-C2H2_6 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1285 - - vun:114191365 316.235