Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1250 ATGACGACACCGCCGTCTTCCTCCTCAGCTTCGGAATCGCAGTTTTCCTATTCAAACCCTTCCTATTTCCCCGTCCCCTTTCATCTGCAGCAACCAGCAACTACTCACTACGCTGCACCCTACGTCGCCGCCCCTTCCGTGCAAATCCCCGCTCCTCCCGTCGTGGGTCCGGTTGCGCCGGCACCAGTTCCCGCTGTATACTCCGCCGTGCCTCAATACCAGGCGCAGCAGCTATTTGAGAGGGATGCTCAAATAATAACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCAATTGCGAGCAGCGATGTGGAACACAAAACCGATGCCAAAAGGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAATCATGGGAGGATCCTATCCTCGCTGAGTGGCCAGAAGATGACTATCGGCTCTTCTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCTTTTTCCCGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGATAAGCGTACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGACCAATAAAACTACGCAAGAGTAACTGGAAGGAGAGGACTGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAAAAGAAACCAAAATTGTCCAGGAAAGGTGTGCTGCACAAGTAA 735 0.4844 MTTPPSSSSASESQFSYSNPSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPVAPAPVPAVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKRKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALEKQKNHIQKKPKLSRKGVLHK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1250 244 Gene3D - 83 228 IPR012677 -
Pvu7g1250 244 SUPERFAMILY RNA-binding domain, RBD 119 216 IPR035979 GO:0003676
Pvu7g1250 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Pvu7g1250 244 CDD RRM_RBM42 130 212 IPR034215 -
Pvu7g1250 244 PANTHER RNA-BINDING PROTEIN 42-LIKE 34 244 - -
Pvu7g1250 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Pvu7g1250 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Pvu7g1250 244 MobiDBLite consensus disorder prediction 225 244 - -
Pvu7g1250 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 34 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1250 Pvu-Chr7 21652005 21655206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1250 138 236 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 2.20e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1250 K25079 - gmx:100800281 427.943