Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1214 ATGGAGAAGAAGAAGCTCAACCTCATCATCCCTAATCCTCAACCTCATGGAATCATTACACGCCGCAATTCCCCAATCTCTCAAGGACAAGATTCACTCTGGGTGATGAATTTGAGGACTAGCGAAACAATGGATTCTGGAGCTTATCCGGAGCGTCCAGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATTGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGACTGGGATTGCTGGAAGAGTTTCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGAGCCGGAATGCACTTATTATTTGAGAACTGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAGCCGAGTAATATGATGCTTTCATTACAGGATTCTTCTCTGTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATTTGCAGGAGGAATTACAAATTGGGCAAGGGCATCATACATTCCCAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCAGTGCCTGGTTGGAGTGCATACAGTGGTCAAGTGGGATCAATCTCTAATTCAGACAGTCTTCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACACAGGAACACATGGAGCATATTCTCAATTCCGTTCTGGCACTGTTCCAGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGACTGTAAGTTTGGTGCAGTCTGTCGATTCCACCACCCACACGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCATCCAATGGGAATTTTCACCTATAATATCTCTGCATCGCCTTCAGCTGATGCCCCGAGCAAGCATCTGCTACGATCTTCATCAGGAACTGCTGCGTTAAGTTTATCTTCGGAAGGACTTGTTGAGTCGAGCTCAGCAACGCCCAGGCGGCTCTCATTATCAGAGACAAGACAGATTCCTTCTGGTGATGGTGACATTGATGATGATGGATGA 1335 0.4592 MEKKKLNLIIPNPQPHGIITRRNSPISQGQDSLWVMNLRTSETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQTGIAGRVSLNTLGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSLYPTVHSPTTPGQQSFAGGITNWARASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQVGSISNSDSLQQAMRNGQTYGTSRQGELANTGTHGAYSQFRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPHERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADAPSKHLLRSSSGTAALSLSSEGLVESSSATPRRLSLSETRQIPSGDGDIDDDG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1214 444 Gene3D - 51 134 - -
Pvu7g1214 444 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Pvu7g1214 444 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Pvu7g1214 444 Gene3D - 141 191 - -
Pvu7g1214 444 Gene3D - 296 379 - -
Pvu7g1214 444 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Pvu7g1214 444 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Pvu7g1214 444 MobiDBLite consensus disorder prediction 411 433 - -
Pvu7g1214 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Pvu7g1214 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Pvu7g1214 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 170 IPR000571 GO:0046872
Pvu7g1214 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Pvu7g1214 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Pvu7g1214 444 SUPERFAMILY CCCH zinc finger 308 333 IPR036855 GO:0046872
Pvu7g1214 444 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 24 442 - -
Pvu7g1214 444 PANTHER PROTEIN PHOSPHATASE RELATED 24 442 - -
Pvu7g1214 444 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Pvu7g1214 444 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Pvu7g1214 444 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Pvu7g1214 444 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Pvu7g1214 444 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Pvu7g1214 444 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Pvu7g1214 444 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Pvu7g1214 444 MobiDBLite consensus disorder prediction 411 444 - -
Pvu7g1214 444 SUPERFAMILY CCCH zinc finger 353 377 IPR036855 GO:0046872
Pvu7g1214 444 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Pvu7g1214 444 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1214 Pvu-Chr7 19087659 19092941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1214 33 432 C2H2 Transcription Factor Family AT3G02830 61.330 1.05e-174 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu7g1214 zf-CCCH 5.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1214 - - ccaj:109816515 786.178