Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1194 ATGCAGGAACAACTTGATGGGGCTGGCATTGAACTTCCTAGCCTTTATAAGTTGATTGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAAGAGAAATCACTGGGTTGGCTCTGTGGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCTGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAGAAAAAACTTTGTGATGAAACCCAGGAGCCAGTGAAGAATGAAATTGAGGGTGATTGGGATATGTTCAATAAATTAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCAGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTACAAATCCATTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGCACACCTATCCTGTTGACAGAGAGCCCCACACAGAAACCTTATGCTGATCATTTAAACCCTGATACGAAAGAAGGAACTAAAGATGATGGGAAAATAGTCTCTGACAATGGCAAGGATACATGTGCTCTTATGGAGACTGATAATATTAAAGGTTTTGATGCCAATCATCATCTTGACAAAGAAAAGCTTACAAGTACTGGTGGCTTGTCAGATCCACCCAAATCCTTAGCAGATGGTGTTATTGAACAGAGAGGAATCAAACGTGTATGCAGTGGTGAGCTTGATGCTGATAATAAAAAATCTCGGCTCATTGTTATTGATAGTGATGATGAAGAGGGGGTCACTAAGGAGAAATTAGATTGCAATACTCACGAAGTAAAAGAAGATTTATCTAACAATGATACTGGTTCTCTTCCTTCAGAGTGTCCGGATGAAAATTTTTTGTGCACAGTTTGTGATAAAATGGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTATTAAAAGAAAAGGCATATCAAAAGGATCTGGGACAAGATTGTTCGAAGGGTTACTGTACCTGGTGTGGAGGAAACAGTGAATTAGTTAGTTGTAAATTATGCAATATTTTATTTTGCACGAATTGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTTCTGGAACTCAGACCACGAGCTGGCATTGCTGTTGTTGCCGTCCAAATCTTTTGCAAAGACTGTCCTTACAACTAGAGAAAGCTGTGGGGTCCGCTACCATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGACGATTCAGATAATTCAGATGATTCAGATGCACAGATTAATGTTACAATGAGTTCCAAACGAAGACCCAAAAAGAAGATTCGCAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGGCAGTTTTCTGCTTCATCAATTGAGATGAGCTCTGACGGGTGTAATGGAAACTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATCATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACGGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTAACACCTGTGAACGTGCTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTCATGCTTGAAGATGTACCAAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGTGGTATCTTTTTGATTGGTTATACCGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGGGAAATTTGCCATGCTTTACAGGATGGTCCTGACATTCTTGTATGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAAGCGTTAAAACAAGTAAAAAGCCAGAGAAGAATTGCGCTTACTGGGTCACCCCTTCAAAACAATCTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAACTTTCTCCCCTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGAAATGTTAAGGAAGAGATGCTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGAATATGCAAAAGAAGAAGATGCTGTTGAGAATTTTCTCGTGGATGATAGTTCTAGTGACGAAAATTCTGATTATAATGTTCTTGCAGGAGAGAAGATAGGGTTTGCAAATGACTTACTGCAAAGGAAAGATGGTAATGGCTATTTTCTGAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGAAAACGAGGAAAGTTCTGGAAGAAGGGGAAAGATTGGTATAGGTTGGACGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCTGGCTCTTTGGGTATAAATCTTCATGCAGCTAACCGAGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATTTATCGATCATGGAGGTACGGACAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGACGACAACCCTGAGACTTTAGGCAATCTAGGTCAAGAAAACGAGCATCAAGACAACCCAATTTTGGTTGGGCATTCTCTGAAACACACAGAACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTACCAAGCACCATCCATGGTGGATTGCCAATTATCATGAACATGAATCACTGTTGCAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCATTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGATGTGCCTCACGTATCAGAAACCTGCAACATCTTGCCAAATAAACTAAGCCGACGTTTCGCGTCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4104 0.4096 MQEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNEIEGDWDMFNKLVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIHLKHRRHKKISKQREMSTPILLTESPTQKPYADHLNPDTKEGTKDDGKIVSDNGKDTCALMETDNIKGFDANHHLDKEKLTSTGGLSDPPKSLADGVIEQRGIKRVCSGELDADNKKSRLIVIDSDDEEGVTKEKLDCNTHEVKEDLSNNDTGSLPSECPDENFLCTVCDKMALEVHPHPLLKVITCGDCNRLLKEKAYQKDLGQDCSKGYCTWCGGNSELVSCKLCNILFCTNCLKKNLGVELVSGTQTTSWHCCCCRPNLLQRLSLQLEKAVGSATIVVSSSSSDSDDSDDSDNSDDSDAQINVTMSSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSSDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRAKGGIFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEAKEYAKEEDAVENFLVDDSSSDENSDYNVLAGEKIGFANDLLQRKDGNGYFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGNLGQENEHQDNPILVGHSLKHTEPHSNGSSYSDKLMESLLTKHHPWWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPHVSETCNILPNKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1194 1367 CDD SF2_C_SNF 1002 1145 - -
Pvu7g1194 1367 PANTHER RAD54-LIKE 2 1365 IPR044574 GO:0016887
Pvu7g1194 1367 ProSiteProfiles ADD domain profile. 353 485 IPR025766 -
Pvu7g1194 1367 SMART ultradead3 602 823 IPR014001 -
Pvu7g1194 1367 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 811 IPR014001 -
Pvu7g1194 1367 PANTHER RAD54-LIKE 2 1365 - -
Pvu7g1194 1367 CDD ADDz_ATRX 361 459 - -
Pvu7g1194 1367 Pfam Helicase conserved C-terminal domain 1010 1134 IPR001650 -
Pvu7g1194 1367 Coils Coil 1250 1270 - -
Pvu7g1194 1367 MobiDBLite consensus disorder prediction 233 250 - -
Pvu7g1194 1367 Gene3D - 579 860 IPR038718 -
Pvu7g1194 1367 MobiDBLite consensus disorder prediction 224 250 - -
Pvu7g1194 1367 SMART helicmild6 1037 1134 IPR001650 -
Pvu7g1194 1367 Pfam SNF2-related domain 629 929 IPR000330 GO:0005524|GO:0140658
Pvu7g1194 1367 MobiDBLite consensus disorder prediction 480 514 - -
Pvu7g1194 1367 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1014 1182 IPR001650 -
Pvu7g1194 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 860 IPR027417 -
Pvu7g1194 1367 Gene3D - 871 1218 IPR027417 -
Pvu7g1194 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1202 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1194 Pvu-Chr7 18266379 18295516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1194 531 1187 RAD5 or RAD16-like Gene Family AT5G43530 22.949 1.49e-30 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu7g1194 SNF2_N 3.9e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1194 K10779 - gmx:100794911 2388.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1194 7 18266379 18295516 Pvu7g1194 7 18266379 18295516 ECH