Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1185 ATGGCCATCGCGGAGGAGGAGCAAGTATCTGCACTGAAGCAAAAGCTGCGCGAGTTGGTCGAGAGTATCGTGGACAGGGACGATTACACCGTTCACGCTGCGGACAAGGCTATCCATGCTCTTTCTGCCCTCAAGGACTTGAAGTCCACCACTTTCCACTCAACCAACATGGAACACACACCCGTTCCTTTGCACTTTCGATGCCCTCTCTCTGATCACTTGATGACAGATCCTGTTATCTTGACCACTGGACAGACTTTTGATCGTCCGTTCATCCAGAAGTGGCTGAATGAAGTCAACGGAGTTTGCCCTCAGGCCCAAGAAGTCCTCTCTCTCTGTATTCTCACTCCAAATTTCTTGCTCCAAGGCATGATCTCAGAATGGTGCAAAGAGAACGGAGTTGACCTACCAAAGCCCATTTTTGACATTCACGACGAACAACTGACCGAGGCACACAAGCACCGTTTGCGTTCACTGCTCTTCAAACTGTCACTGTCACTTTCTGAACAGAAAGAAGCTGCAAGAGAGCTTCGTCAGTTAGCAAAACGAATGTCCGCAATTCGAACACTCTTTGGAAACTCACAAATGGTTAATCTTCTGATGCGTCCGGTATCAATCGGCACAGCATCTATGGACCCTGATCTCCACGACGATTTGATCGCAACTCTTCTAAATATCTCAATAAACGATACAAACAAGAGGTTGTTAGCAGAAAACGAAAAAGTCATCAGCTTTCTGATTGACTCATTGAAATCCGGAACAGTTCAGACAAGAAGCAATGCAGCTGCAGCTGTTTTCTCAATGTCATCTCTTGATTCAAACAAGCACATAATTGGAAAATCAGGCGCTATAAAATACTTGGTGGATTTACTGGAAGAGGGAGACCCATTAGCCATGAAAGATGCTGCGTCAGCCTTGTTCAAACTATGCTTTGCGCGTGAAAATATAGCGAAGACCGTGCGAGAAGGGGCAGTGCAGATTATTCTTGGGAAGATCGTTGACCATGTTCTTGTTGATGAGTTGTTGTCATTGTTGGCACTTCTGGCTACACATTCTAAGGCGGTTGAAGCGTTGGTGAATCATGGTGGTGTCCGTTTCTTGCTTGATATCTTGAGGGAGAACACAGTAGAACGCATAAAGGAAAACTCTGCTGTAATTCTACATCTAATCTGTTACCATGACAGAGAGAAAAGGGCGGAAATTAGAGAGGAAGAAATGGCGAACGGCACACTCTCTAGGCTTGTTCAAAACGGGTCCTCAAGGGCTAAAAGGAAAGCTAGCTCCATCCTTCACTGTCTTGGCATAGATGAATCCACTTCGCACAACAATCCACTTCCCTCAGTTACAATAAACTCTACTTCGTCATCAAATTAG 1374 0.4556 MAIAEEEQVSALKQKLRELVESIVDRDDYTVHAADKAIHALSALKDLKSTTFHSTNMEHTPVPLHFRCPLSDHLMTDPVILTTGQTFDRPFIQKWLNEVNGVCPQAQEVLSLCILTPNFLLQGMISEWCKENGVDLPKPIFDIHDEQLTEAHKHRLRSLLFKLSLSLSEQKEAARELRQLAKRMSAIRTLFGNSQMVNLLMRPVSIGTASMDPDLHDDLIATLLNISINDTNKRLLAENEKVISFLIDSLKSGTVQTRSNAAAAVFSMSSLDSNKHIIGKSGAIKYLVDLLEEGDPLAMKDAASALFKLCFARENIAKTVREGAVQIILGKIVDHVLVDELLSLLALLATHSKAVEALVNHGGVRFLLDILRENTVERIKENSAVILHLICYHDREKRAEIREEEMANGTLSRLVQNGSSRAKRKASSILHCLGIDESTSHNNPLPSVTINSTSSSN* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1185 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 135 IPR013083 -
Pvu7g1185 457 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Pvu7g1185 457 SUPERFAMILY ARM repeat 166 437 IPR016024 -
Pvu7g1185 457 SUPERFAMILY RING/U-box 53 138 - -
Pvu7g1185 457 SMART arm_5 229 270 IPR000225 GO:0005515
Pvu7g1185 457 SMART arm_5 144 182 IPR000225 GO:0005515
Pvu7g1185 457 SMART arm_5 271 311 IPR000225 GO:0005515
Pvu7g1185 457 SMART arm_5 351 392 IPR000225 GO:0005515
Pvu7g1185 457 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Pvu7g1185 457 PANTHER U BOX DOMAIN-CONTAINING 6 433 - -
Pvu7g1185 457 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Pvu7g1185 457 CDD RING-Ubox_PUB 66 104 IPR045210 -
Pvu7g1185 457 Gene3D - 335 444 IPR011989 -
Pvu7g1185 457 Gene3D - 164 334 IPR011989 -
Pvu7g1185 457 Coils Coil 2 22 - -
Pvu7g1185 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1185 Pvu-Chr7 17250325 17252111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1185 124 430 U-box Gene Family AT3G07360 51.757 6.67e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1185 - - gmx:100806132 542.732