Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1170 ATGGAGTCAAGCAACTTACATGCTGATAAAAGGGCAGATAAAAAGGTAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTAGAATTGGTGGCAATGCAACTGATGGGTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACCCTTGAGGGTCTCAAATGCTCTGCTTGCAATTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATTTCACTCCTCTGATGATTATGCCGGATACTACTCAGATAGGGCCCATTTGGGCTCATTTATCTCCCAACAAAAGTGGTTCAATTAGTCCTTCTGATGTGTCTGATGAGAAGGACTGTGAAGATGGGATGACTAAGGAGGAGGGAAATCCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTGCTTTTTGCAGAAAGGGCAGGGTGGAGGTTACAGAAGCTAGATGAATCTGTGGTGCAAAAGTTTTGCCAAGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATTCACAATAACAAGAACACTTTTGTCAAGAGAAATCCCTCCACTAGCTAG 594 0.4276 MESSNLHADKRADKKVIRYTECLKNHAARIGGNATDGCGEFIADGEEGTLEGLKCSACNCHRNFHRKEIESSDSYFTPLMIMPDTTQIGPIWAHLSPNKSGSISPSDVSDEKDCEDGMTKEEGNPTEKVKKRFRTKFTQEQKEKMLLFAERAGWRLQKLDESVVQKFCQEIGIKRRVLKVWIHNNKNTFVKRNPSTS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1170 197 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 130 187 IPR006455 -
Pvu7g1170 197 MobiDBLite consensus disorder prediction 106 128 - -
Pvu7g1170 197 SUPERFAMILY Homeodomain-like 124 189 IPR009057 -
Pvu7g1170 197 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
Pvu7g1170 197 MobiDBLite consensus disorder prediction 98 128 - -
Pvu7g1170 197 Gene3D - 115 190 - -
Pvu7g1170 197 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Pvu7g1170 197 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Pvu7g1170 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 192 - -
Pvu7g1170 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 12 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1170 Pvu-Chr7 15477492 15478264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1170 10 197 ZF-HD Transcription Factor Family AT2G02540 48.585 6.55e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu7g1170 ZF-HD_dimer 3.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1170 - - gmx:100793926 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1170 7 15477492 15478264 Pvu7g1170 7 15477492 15478264 ECH