Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1168 ATGATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTTACGTTCCCTTCGCCGTCCCTTGCCGAGGCAGAGAACTTCGCCGGCGGGCCCTTCCGATCCAACGTTCGCTCCTTCCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTGTTCCCCCACTTGTTGACGTGGCAGATACTCTTCCGCGTCGGCGAGCTCACCGAAGGCCCTGACTCGCCTGTTGTGTGCCTGGACGTTGTGCAAGAGGACGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGAAAGCGTTACCATTTTATAATCAAAGCAGATGGAAGCTCTATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCTAAATGCAAGTCTTGCAACCACGTGACTACCACTGATGATGTTGAAGACTGGGTGTACCACCAGTTAGAGAACACGACTCATCTTTTACATGGCGTTGTCCATGGCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTGAGCGTGATGGATGTTTCAAAGAAATATGGGTTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACACCCATGGTATGGCGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAACCTATCCAACCTACCCTTGTCCACCTTTTCCCAGGGACAGATTCCGATGCCCCATTCCCGTGTTCAGGACATGATAAAATATTTCCAATCTTTGTCAGAGCATGAACTTGTAAATACAAGAGACCTCTTTTGTTTCATAATAGGCTTGATTGGTGATGCTCGCAAGAGTGTATCAAATGTGGATGACACAACCTGTAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGACTGACATTGAACGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTGAATTGGCGTGCTCTTAGGGGTGCGGCCTGCAAGGTAGGCTCTCCAGAACTGCTTGATTATTGCCTGGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGGTGCAATACGCAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCCACTGGTGCTTGCTATGGAATTCTAGCAAACAATAACTCTTCAGCCTCGAAGTATCCATCTGAAGACAACCTCCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTCAACTATGTTGAAGCAGGGACAAGGACTCTTGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGTTGTTGCCTTTGTCAGATTTGCACAAGTTACGCATCTCATGTCAGGTTGAACTCGTAGATGAATCTGAAGATCCTGAAGTTATTGCCCCACCGGAATTAATAGTGCTGCCCATGAATGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTAGAAGGCTATAGCGGTGTTGAAGATTCCACCCTGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTACGAGGAAGATGCATTGGGAAGAATGGGTTAAGTAAGTTCCGGATGGAACGAGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCGAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGTGGAGTGTGGCGGCATACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTCAAATGCCAAACCTCTGAATCAAAACTCAAATCTGGGGGGCACTGCAAAGATGAGACTGTCACTAACGTTAGCACTTCAACTAGTTGTTTCGGAAAACCCTTCCCAGTGCCATCAGATGTCAGTTAG 2139 0.4787 MMVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAEAENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRVGELTEGPDSPVVCLDVVQEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHGNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVENLSNLPLSTFSQGQIPMPHSRVQDMIKYFQSLSEHELVNTRDLFCFIIGLIGDARKSVSNVDDTTCKKRRFNASGLSISWEKTDIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNTQTGVYEFRLEAATGACYGILANNNSSASKYPSEDNLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVELVDESEDPEVIAPPELIVLPMNATVAELKSQAANAFQDVYLMFRRFQVDELEGYSGVEDSTLVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQTSESKLKSGGHCKDETVTNVSTSTSCFGKPFPVPSDVS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1168 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 682 - -
Pvu7g1168 712 PANTHER OS01G0877500 PROTEIN 2 682 - -
Pvu7g1168 712 SMART PHD_3 628 674 IPR001965 -
Pvu7g1168 712 CDD PHD_MMD1_like 628 673 - -
Pvu7g1168 712 Pfam PHD-finger 629 675 IPR019787 -
Pvu7g1168 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Pvu7g1168 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1168 Pvu-Chr7 15455301 15460437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1168 79 673 PHD Transcription Factor Family AT5G22260 29.495 2.07e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu7g1168 PHD 1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1168 - - gmx:100818189 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1168 7 15455301 15460437 Pvu7g1168 7 15455301 15460437 ECH