Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1152 ATGGCTTCTTCTAGCTACTCCAATTCTCCATGTGCAGCATGCAAGTTTTTGAGGAGGAAGTGCATGCCAGATTGCCTTTTCGCCCCATATTTCCCTCCAGAGGAGCCTCAGAAGTTTGTGAATGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGATCCTGAACGAGGTGCAACCCTATCAGAGAGAGGACACTGTGAACTCTCTGGCCTATGAAGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCTATTTCAGTGCTCCAAAGACAAGTTTTAAAGCTCCAGAAGGAACTTGATGCTACAAATGCTGATTTGATCCGCTACAACACTTGCAATGAAATGCGAAATAGTAGTAATCATCATGAAGGAAGAAGCAAGATGATTAGTAATGATGATGGTGGTGGTTCCTCACCTGGTTTAAGTTTCTATTATGCTTCTTCTTCTGCTAATTGGAACAATGGTCCTTCTGATGAAAATGGGTACCCCAAAGGAGATATATAA 516 0.4302 MASSSYSNSPCAACKFLRRKCMPDCLFAPYFPPEEPQKFVNVHKIFGASNVSKILNEVQPYQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYNTCNEMRNSSNHHEGRSKMISNDDGGGSSPGLSFYYASSSANWNNGPSDENGYPKGDI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1152 171 Coils Coil 89 109 - -
Pvu7g1152 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 135 - -
Pvu7g1152 171 MobiDBLite consensus disorder prediction 119 139 - -
Pvu7g1152 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 135 - -
Pvu7g1152 171 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pvu7g1152 171 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1152 Pvu-Chr7 14633239 14634591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1152 4 116 AS2 family AT3G27650 82.301 7.63e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu7g1152 LOB 2.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1152 - - gmx:100788656 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1152 7 14633239 14634591 Pvu7g1152 7 14633239 14634591 ECH