Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1123 ATGGAAAACACTGTGACATATGCGACTGATCTCAACCTCAAGGCAACTGAGCTTAGATTGGGGCTCCCAGGAACAGAAGAAAGTGAGGGAAAAACACTGCCTGCAGCTGTAAGAATTACCAACAAAAGGCCTTTGAATGAAACTTCAGAGGAGACCCTTTCCAAGGGCTCTAATGCTCCAAAAACTGTTCAAACTGAGGCCGCCCCTCCTGCCAAGGCAAAGATAGTGGGGTGGCCGCCAATCAGATCCTATAGGAAAAACAGCCTTCAGGAGAATGAGGGTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCCCCTTACCTTAGGAAGATTGACTTGAAGGTATATGGAGGCTACACACAACTTCTCATAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCCGACTATGCACCAACATATGAAGACAAGGACGGTGACTGGATGTTGGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTGAGAATCATGAAAGGATCAGAGGCCAGGGGTTTGGGTTGTGGTGTCTGA 582 0.4656 MENTVTYATDLNLKATELRLGLPGTEESEGKTLPAAVRITNKRPLNETSEETLSKGSNAPKTVQTEAAPPAKAKIVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLIALETMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1123 193 Pfam AUX/IAA family 43 190 IPR033389 -
Pvu7g1123 193 Gene3D - 90 193 - -
Pvu7g1123 193 ProSiteProfiles PB1 domain profile. 96 183 IPR000270 GO:0005515
Pvu7g1123 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 190 IPR003311 GO:0005634|GO:0006355
Pvu7g1123 193 SUPERFAMILY CAD & PB1 domains 86 182 - -
Pvu7g1123 193 MobiDBLite consensus disorder prediction 40 68 - -
Pvu7g1123 193 PANTHER AUXIN-INDUCED PROTEIN 10 190 - -
Pvu7g1123 193 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1123 Pvu-Chr7 13820110 13821824 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1123 99 189 B3 DNA Binding Superfamily AT2G46530 36.264 5.69e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu7g1123 AUX_IAA 5.7e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1123 K14484 - gmx:100527777 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1123 7 13820110 13821824 Pvu7g1123 7 13820110 13821824 ECH