Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1118 ATGTTGGCTACTGTGTCCTTCTCAGAGACGGATATAAAGACAATAGCAATGCCAAAGGAACTCTTGAAGGTCAACTTGACCAAGCTCTCAGAAGCTGTGACATGTAAGTTGTGCAATAAATGGTTGAGAAAGGCAGCCACAATAACAGAGTGCTGTCATACCTTTTGCAGGGAATGTATAGAAAAGAAGTTAATAGATGAGAAATTAAATCATTGTCCATTATGCAATACAGACTTGGGTTGTTCTCCTCTCGATAAATTAAGGTCAGATACTCGTAAGCAAGATTTGAGGGACAAAATTTTCCCATTAGAAGATTGGAATGATAAGGAACCTTCCTCCAAACTGATAGCCAAAATAAAAAAGAATTTTGCTTCTTCATTAAAACCCAATAGAGAAATATCTAAAGCTGGTTTTAGAAAAGTTGTCATTGCAGAAGAACCAGATCTTTCTGCTCCCAAACTTGATAAAGTGGAAGATGCTAAGGAAGATGAAAACGAGGGTGATGCGGAATTTGGGGAAGAAGCTGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTCACTTGCTCTGCACAACCTCCAGGACAAGAAAAGACAGATGGTGATCAGCCTCGAGTTGAAACTTCCAGCCGAACTCTCAAAATCAGAATTCCGAATTTTTCAAAACCAAATACAGAGTTAAGGAATGAAAAGGTTGACTTGTTTGAGCCATTAAATTGCCTGGTGGAAGGTGGAAGAAAACGCAAGTCCTGTAGTAATTCCACCATGCAAGACAATAGTGTCACTTCAGTGCTTGTGCACTCTAATGACGATGACCCTCAGGTTGGCATGATCGAAATCGACAACCATAGTCACAGAACTGATGGTAACCAAAACGAGTCAATTCCTTCAAGCTCAGATTCAGTAAAACCTGTTGTGAGCACCAAAGAAAAAAAACCAAAAATCTCGGAGGACTTGAATTTTCCAGCACCAGCTGAAATTGATTCCGACACTGAAAGCAGCGAAGAGTTTGGTCCAATCTGGTTCTGCTTGGTTGCTGCAGAAGAGAATAAAGGAAGTGCACCATTGCCACAACTATCTTCGTGCTACCTACGTGTCAAGGATAGCAGTGTAACTGTTTCCTATATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACTGAGGTGGATATCACATTACAAGGGCGGCCAGTTTTATCTTCACTGCAACTGAAAACCTTAGTAGACATGTGGTTGCAAACAGTGCCAAAGAACGACATTCTGACATCTTTTGGAAGCTCAGCCAAGGATTTTATTATGGTTCTTTCGTATGGTCGAAAGGCTAACACCTCAAACTACCTTCCTTGTTCTTAG 1377 0.4081 MLATVSFSETDIKTIAMPKELLKVNLTKLSEAVTCKLCNKWLRKAATITECCHTFCRECIEKKLIDEKLNHCPLCNTDLGCSPLDKLRSDTRKQDLRDKIFPLEDWNDKEPSSKLIAKIKKNFASSLKPNREISKAGFRKVVIAEEPDLSAPKLDKVEDAKEDENEGDAEFGEEAATIGSARRAKAAARIKFTCSAQPPGQEKTDGDQPRVETSSRTLKIRIPNFSKPNTELRNEKVDLFEPLNCLVEGGRKRKSCSNSTMQDNSVTSVLVHSNDDDPQVGMIEIDNHSHRTDGNQNESIPSSSDSVKPVVSTKEKKPKISEDLNFPAPAEIDSDTESSEEFGPIWFCLVAAEENKGSAPLPQLSSCYLRVKDSSVTVSYIKKYLVKKLGLASETEVDITLQGRPVLSSLQLKTLVDMWLQTVPKNDILTSFGSSAKDFIMVLSYGRKANTSNYLPCS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1118 458 Pfam Zinc finger, C3HC4 type (RING finger) 35 75 - -
Pvu7g1118 458 MobiDBLite consensus disorder prediction 153 177 - -
Pvu7g1118 458 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 22 449 - -
Pvu7g1118 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 125 IPR013083 -
Pvu7g1118 458 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 22 449 IPR044807 GO:0004842
Pvu7g1118 458 SMART ring_2 35 75 IPR001841 -
Pvu7g1118 458 MobiDBLite consensus disorder prediction 192 214 - -
Pvu7g1118 458 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Pvu7g1118 458 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Pvu7g1118 458 SUPERFAMILY RING/U-box 29 84 - -
Pvu7g1118 458 MobiDBLite consensus disorder prediction 294 309 - -
Pvu7g1118 458 MobiDBLite consensus disorder prediction 288 319 - -
Pvu7g1118 458 Gene3D - 325 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1118 Pvu-Chr7 13591085 13594278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1118 21 372 C3H Transcription Factor Family AT2G30580 30.208 2.17e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1118 K16277 - gmx:102669950 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1118 7 13591085 13594278 Pvu7g1118 7 13591085 13594278 ECH