Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu7g1072 | ATGATTTCTTCTGGGATTAACTTGGTGATGACTGTGATTGGGTTCGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATATGTGCTCGAATTCACTTGAATGCTGCAAGGAGATCCTTTCCTATTGTCTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTGCCATGGTCTCGAACGCGTGACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAGTCTGTCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTCCCTTATTGTGGACACTCTTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAATTCCACGTGTCCCGTGTGTCGGATATCGTTGCGTGAATTTCCAGATAGAAAATGGTTAATGCAACCCTTGTTCAGCTCTGCTTTACAACCTGGCATAGAATCCTTTGATATGCGTCATTATCACTGTATGATGGATGATAATGGATTACCAGCAAGAACCCCTGACAACCATGGGGTGAATCCTATAGAAGAAGATAATTTTCCAGCTGAGGGTGGGGGAGCAGTTTCTATGGACAATATCACATGTTTAAGTGAGGGTGACTTCATTAAAGATGAGGCGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA | 684 | 0.4459 | MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNAARRSFPIVSRSNLSMMERGCHGLERVTVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKWLMQPLFSSALQPGIESFDMRHYHCMMDDNGLPARTPDNHGVNPIEEDNFPAEGGGAVSMDNITCLSEGDFIKDEAKKHVESPSNFQN* | 228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu7g1072 | 227 | SUPERFAMILY | RING/U-box | 81 | 135 | - | - | |
| Pvu7g1072 | 227 | PANTHER | OS11G0150450 PROTEIN | 1 | 224 | - | - | |
| Pvu7g1072 | 227 | CDD | RING-H2_PA-TM-RING | 86 | 129 | - | - | |
| Pvu7g1072 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Pvu7g1072 | 227 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Pvu7g1072 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 134 | IPR013083 | - | |
| Pvu7g1072 | 227 | PANTHER | OS11G0150450 PROTEIN | 1 | 224 | - | - | |
| Pvu7g1072 | 227 | SMART | ring_2 | 87 | 128 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu7g1072 | Pvu-Chr7 | 11946853 | 11950088 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu7g1072 | 45 | 136 | C3H Transcription Factor Family | AT4G10150 | 42.391 | 1.99e-19 | 82.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu7g1072 | - | - | gmx:100786109 | 434.106 |