Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1059 ATGGAACTTCTCTCTGTGTCTGTCACACTCTGCAAATGCCAAACATTTTCCTTTCAGAAACCAAAGACAACCCAAATTCATGAACTTCCAGTAAACTTAAGATTACCCTGCAAAATAAACCATTCCAATCTTTCTTCTTATTCGTGTAATTGGTCTATTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATTCTACCTCCACACAGAACCGCCATTGGATGGTGGTCATGGACACACCTCCTCAAGGGCTCAATTCAAAGCCAGAAGTCATTGATTATTATGCCAACGTACTACAAACAGTTATCGGCAGTGAGAAAGATGCTCAGATGTGTATATATGATGCTTCATGGGACACCCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGATTAGGCCTGACCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCTAGGGACCAGGCAGTTCACCCTTCAGGATTACAAACTGTTACCAATATGTTGTTCCCTGCTGGAAATCCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAAGCTCAAATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTCTCCTGGAAGACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGATTGTGCTCAAGAGCTAGCTGGTGTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAGTTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTAACTTAGAAAATAGTTGGAATGTTTCCAACTCTTCTGAAGCAAGTCATGAAGAGCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTGAGCTGGTTGAAGTTAAAGTTATTATGGACAAGATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACAACAGAGGAAGCTGCAAGTGCAGCGCTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCTGGATCGTCAAGTTGA 1170 0.4154 MELLSVSVTLCKCQTFSFQKPKTTQIHELPVNLRLPCKINHSNLSSYSCNWSITRVAATTYPSFNSTSTQNRHWMVVMDTPPQGLNSKPEVIDYYANVLQTVIGSEKDAQMCIYDASWDTHFGFCCDIDEEISSQLASLPGVLLIRPDPDFNSLKKDYSLSRDQAVHPSGLQTVTNMLFPAGNPKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNSFESENKDYAGSNLENSWNVSNSSEASHEEPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAGSSS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1059 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Pvu7g1059 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 57 152 IPR037045 -
Pvu7g1059 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 265 IPR037045 -
Pvu7g1059 389 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 49 387 - -
Pvu7g1059 389 SUPERFAMILY RNA-binding domain, RBD 285 386 IPR035979 GO:0003676
Pvu7g1059 389 Gene3D - 266 389 IPR012677 -
Pvu7g1059 389 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 49 387 IPR039206 GO:0016554
Pvu7g1059 389 SMART rrm1_1 298 371 IPR000504 GO:0003723
Pvu7g1059 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 365 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1059 Pvu-Chr7 11754354 11757852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1059 289 384 C2H2 Transcription Factor Family AT2G19380 32.292 3.01e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1059 - - vun:114191397 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1059 7 11754354 11757852 Pvu7g1059 7 11754354 11757852 ECH