Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1023 ATGGCGGCAGCTTCCTCATCCACTCCATTCTCGGGAACCAGAGAAGAAAGCCCTCAGATTACAACACACCATCAACCCTCCACAGTTGCTCCAATCACAGTTCCTCAAAAGAAACGGAGGAATCAACCTGGAACCCCAAATCCAGACGCGGAGGTGATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTTCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGAATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCAAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCATTAGCACATGAGAGTGCAAGATACCCCAGTAGCTCAAATCCTTTGGGAACTCATTTGTTTGGCACAAACCACACTAGTTTAACCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCAAAATCAGAACCAAACAGTCACTAACATTGGTGCAGCTCTTAAGTTTGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGCTTTCTTCATGAATAACAACACCAATCAAACATTATTTGAAGAACACCAATCACAACAAGGACAACTATTCTCAAACAAGCAACTACATGGCCTAATGCAGCTCACTGCTCTTGATGGCAACACTAACAACTCCAATTCTTCATCAGTTGCTGCTCCTAATTCCAATCTCTTCAACCTCAGCTTCTTCCCAAGTAGCAATAGCACTAGCACCATTATCCCTGATCAATTCAACAACATAAGTGGTAGTGACCAAGGAACAACACCACCACCACTCTTTGTTAATAACAACCCTGCAGTAAGTGATCATGTGGGTTCAAGTTTTTCTTCGCTCTTTGGTGATTCAATAGAAAACGTATCATCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCCTCTCAAATGGGTTCAACCACAACCACCAGCGGTTCTTCTTTACTTAGAGGAATGTCTAGCAATGGTTCCAAAGCTGAAAATGGTCACCACCACCACCACAATCTTCAAGGGTTGATGAACTCTATTGCTAATGGAAACACGTCCTTGTTTAGGAACATGCAAGGGAATGAAAACAACCTTTCTGGGTTTCACAACGTCGACGAGTCCAACCATAAGTTGCCCCAGAATCTTAATAATGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTTAGAAATATGAATGGTGGATTTTCACAGAGAGAACAACTACAACAACAACAACGTGTCATGGGTACTGAGTTCTTTGGACCCTGA 1587 0.4335 MAAASSSTPFSGTREESPQITTHHQPSTVAPITVPQKKRRNQPGTPNPDAEVIKLSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARYPSSSNPLGTHLFGTNHTSLTLSQVGTQLSQVQNQNQTVTNIGAALKFEHLIPPLNQSSFGHSPQSMPSSAFFMNNNTNQTLFEEHQSQQGQLFSNKQLHGLMQLTALDGNTNNSNSSSVAAPNSNLFNLSFFPSSNSTSTIIPDQFNNISGSDQGTTPPPLFVNNNPAVSDHVGSSFSSLFGDSIENVSSPHMSATVLLQKASQMGSTTTTSGSSLLRGMSSNGSKAENGHHHHHNLQGLMNSIANGNTSLFRNMQGNENNLSGFHNVDESNHKLPQNLNNVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQQRVMGTEFFGP* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1023 528 Gene3D Classic Zinc Finger 120 198 - -
Pvu7g1023 528 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 513 - -
Pvu7g1023 528 Gene3D Classic Zinc Finger 47 116 - -
Pvu7g1023 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 513 - -
Pvu7g1023 528 SMART c2h2final6 142 162 IPR013087 -
Pvu7g1023 528 SMART c2h2final6 66 88 IPR013087 -
Pvu7g1023 528 SMART c2h2final6 107 137 IPR013087 -
Pvu7g1023 528 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pvu7g1023 528 MobiDBLite consensus disorder prediction 1 43 - -
Pvu7g1023 528 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Pvu7g1023 528 MobiDBLite consensus disorder prediction 405 426 - -
Pvu7g1023 528 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pvu7g1023 528 MobiDBLite consensus disorder prediction 1 51 - -
Pvu7g1023 528 MobiDBLite consensus disorder prediction 405 434 - -
Pvu7g1023 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1023 Pvu-Chr7 10700174 10704561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1023 61 505 C2H2 Transcription Factor Family AT2G02080 47.292 8.31e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g1023 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1023 K25870 - gmx:100780268 771.541