Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1004 ATGCAAAACAACCGCAATTATGTTCAAAATCTTGAAAGGTTCAAAATTGAAGAAAAAACAGAAGAGTCTTGTTGCATCTGTCTTGGGGAATTTTCAATTGGATCAAGAGCAATTCGCATGCCCCAACCATGTTCTCATATCTTTCATCAACATTGCATCACAAAATGGCTCAACATTAGTCACACATGTCCTTTATGTCGCAGGAACATCTAG 213 0.3756 MQNNRNYVQNLERFKIEEKTEESCCICLGEFSIGSRAIRMPQPCSHIFHQHCITKWLNISHTCPLCRRNI* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1004 70 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 67 - -
Pvu7g1004 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Pvu7g1004 70 ProSiteProfiles Zinc finger RING-type profile. 24 67 IPR001841 -
Pvu7g1004 70 SUPERFAMILY RING/U-box 13 70 - -
Pvu7g1004 70 Pfam Ring finger domain 23 67 IPR001841 -
Pvu7g1004 70 SMART ring_2 24 66 IPR001841 -
Pvu7g1004 70 SMART ringv_2 23 67 IPR011016 GO:0008270
Pvu7g1004 70 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1004 Pvu-Chr7 10428439 10428651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1004 9 70 C3H Transcription Factor Family AT1G68070 40.323 8.41e-13 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1004 - K22378 pvu:PHAVU_007G098000g 157.147