Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1003 ATGCAGTGGTCAATTGTAGATGATGGTTGTATAATTGATTTGATGGATTTGGGTCACCGCAACAACACCAACAATGACATCAATGCTGAATTTTTAAGATCAACAGAGGATGGTGGTGTTTATATCTTTGATTCCATGAACTTGGATCACAACAACAACATGCAAAACAATGGCAATAGAACTTTAAGATCATTCCAAGATGGTGTTTTCATCTTTGATTCCATGCAAAACAACAACAATTCTGGTCAAAATCTTGAAAGAATTTTCAATTGGATCAAGAGCAATTCGCATGCCCCAACATGTTCTCATATCTTTCATCAACATTGCATCACAAAATGGCTCAACATCAGTCATACATGTCCTTTATGTCGCAGGAACATCTAA 384 0.362 MQWSIVDDGCIIDLMDLGHRNNTNNDINAEFLRSTEDGGVYIFDSMNLDHNNNMQNNGNRTLRSFQDGVFIFDSMQNNNNSGQNLERIFNWIKSNSHAPTCSHIFHQHCITKWLNISHTCPLCRRNI* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1003 127 Pfam Ring finger domain 95 124 IPR001841 -
Pvu7g1003 127 SUPERFAMILY RING/U-box 99 127 - -
Pvu7g1003 127 ProSiteProfiles Zinc finger RING-type profile. 101 124 IPR001841 -
Pvu7g1003 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 127 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1003 Pvu-Chr7 10424422 10424855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1003 99 127 Rapid Response to Elicitors AT3G05200 55.172 2.75e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1003 - K11985 pvu:PHAVU_007G097900g 261.922