Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1002 ATGGAAATGCAGTGGTCAATTGTAGATGATGGTTGTATCATTGATTTGATGGATTTGGGTCCCCGCATGGATTTGGGTCACCGCAGCAACACCAACAATGACATCAATGCTGAATTTTTAAGATCAACAGAAGATGGTGGTGTTTATATCTTTGATTCCATGAACATGGATCACAACAACAACATGCAGAACAATAGAAGTATAACTTTAACATCAACCCAAGATGGTGTTTTCATCTTTGATTCCATACAAAACAACCACAATTCTGTTCAAAATCTTGAAAGGTTCAAAATTGAAGAAAAAACAGAAGAATCTTGTTGCATCTGTCTTGGGGAATTTTCAATTGGATCAAGAGCAATTTGCATGCCCAAACCATGTTCTCATATCTTTCATCAACATTGCATCACAAAATGGCTCAACATCAGTCACACATGTCCTTTATGTCGCAGGAACATCTAG 459 0.3725 MEMQWSIVDDGCIIDLMDLGPRMDLGHRSNTNNDINAEFLRSTEDGGVYIFDSMNMDHNNNMQNNRSITLTSTQDGVFIFDSIQNNHNSVQNLERFKIEEKTEESCCICLGEFSIGSRAICMPKPCSHIFHQHCITKWLNISHTCPLCRRNI* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1002 152 SUPERFAMILY RING/U-box 88 152 - -
Pvu7g1002 152 SMART ring_2 106 148 IPR001841 -
Pvu7g1002 152 Pfam Ring finger domain 105 149 IPR001841 -
Pvu7g1002 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 150 - -
Pvu7g1002 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Pvu7g1002 152 SMART ringv_2 105 149 IPR011016 GO:0008270
Pvu7g1002 152 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1002 Pvu-Chr7 10421422 10421880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1002 87 149 C3H Transcription Factor Family AT1G14200 43.939 1.31e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1002 - K22378 pvu:PHAVU_007G097900g 199.519