Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1001 ATGGAAATGCAGTGGTCAATTGTAGATGATGGTTGTATCATTGATTTGCTAGATTTGGGTCACCGCAACAACACCAACAATGACATCAACACTGAATTTTTAAGATCAACAGAAGATGGTGGTGTTTATATCTTTGATTCCATGAACTTGGAAAACAACAACATGCAAAACAATAGCAGTAGAACTTTAACATCAACCCAAGATGGTGTTTTCATCTTTGATTCCATACAAAACAACCATAATTCTGTTCAAAATCTTGAAAGGTTCAAAATTGAAGAAAAAACAGAAAAGTCTTGTTGCATCTGTCTTGGGGAATTTTCAATTGGATCAAGAGCAATTCGCTTGCCCCAACCATGTTCTCATATCTTTCATCAACATTGCATCACAAAATGGCTCAACATCAGTCACACATGTCCTTTATGTCGCAGGAACATCTAG 438 0.363 MEMQWSIVDDGCIIDLLDLGHRNNTNNDINTEFLRSTEDGGVYIFDSMNLENNNMQNNSSRTLTSTQDGVFIFDSIQNNHNSVQNLERFKIEEKTEKSCCICLGEFSIGSRAIRLPQPCSHIFHQHCITKWLNISHTCPLCRRNI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1001 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 145 IPR013083 -
Pvu7g1001 145 ProSiteProfiles Zinc finger RING-type profile. 99 142 IPR001841 -
Pvu7g1001 145 Pfam Ring finger domain 98 142 IPR001841 -
Pvu7g1001 145 SMART ringv_2 98 142 IPR011016 GO:0008270
Pvu7g1001 145 SMART ring_2 99 141 IPR001841 -
Pvu7g1001 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 143 - -
Pvu7g1001 145 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 48 143 - -
Pvu7g1001 145 SUPERFAMILY RING/U-box 82 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1001 Pvu-Chr7 10417688 10418125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1001 80 142 C3H Transcription Factor Family AT1G14200 43.939 1.76e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1001 - K22378 pvu:PHAVU_007G097900g 192.971