Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1000 ATGGAAATGCAGTGGTCAATTGTAGATGATGGTTGTATCATTGATTTGCTGGATTTGGGTCACCGCAACAACACCAACAATGACATCAACACTGAATTTTTAAGATCAACCGAAGATGGTGGTGTTTATATCTTTGATTCCATGAACTTGGATCACAACAACAACATGCAAAACAATGGCAGTAGAACTTTAAGATCAACCCAAGATGGTGTTTTCATCTTTGATTCCATGCAAAACAACTGCAATTCCTTTCAAAATCTTGAAAGGTTCAAAATTGAAGAAAAAACAGAAGAGTCTTGTTGCATTTGTCTTGGGGAATTTTCAATTGGATCAAGAGCAATTCGCATGCCCCAACCATGTTCTCATATCTTTCATCAACATTGCATCACAAAATGGCTGAACATCAATCAGACATGTCCTTTATGTCGCAGGAACATCTAG 441 0.3741 MEMQWSIVDDGCIIDLLDLGHRNNTNNDINTEFLRSTEDGGVYIFDSMNLDHNNNMQNNGSRTLRSTQDGVFIFDSMQNNCNSFQNLERFKIEEKTEESCCICLGEFSIGSRAIRMPQPCSHIFHQHCITKWLNINQTCPLCRRNI* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1000 146 SUPERFAMILY RING/U-box 82 146 - -
Pvu7g1000 146 Pfam Ring finger domain 99 143 IPR001841 -
Pvu7g1000 146 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Pvu7g1000 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Pvu7g1000 146 SMART ring_2 100 142 IPR001841 -
Pvu7g1000 146 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 144 - -
Pvu7g1000 146 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 47 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1000 Pvu-Chr7 10413858 10414298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1000 85 143 C3H Transcription Factor Family AT1G14200 45.161 6.91e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1000 - K22378 pvu:PHAVU_007G097900g 204.527