Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0977 ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGATGACCTTCTCGATTTTCCTGTGGAGGACGTTGACGGGGGCGCCCCTACCTTGCCCTCCGTCGCCGCCGCCGCCGCCGGGAACTGCAACTCACTTGCAAGCATCTGGCCCGCCGGCTCCGATTCATTTCCCGGTTCCGACTCGGTGTTTTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCGAACTTTGTGGAGGATTCGTTTTGTGGGGGAAGCTTGACCATGAAGAAAGTGGATGAGCCATCGTGCACCACCACAAAGGAAGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCATGCTCCGGGGGAAAGACGGTGCCGGCGCCGCCACGCAGCCCGGAGGTTTACATCCCTGTGCCATGTGGACGTGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCTCGGCCTGCCATGAACCTCATTTCACCTGCCTCCTCCTTTGTCGGGGAGAACATGCAGGCAAATGTAATTTCCTCCAAGGCCTCTTCGGACTCTGAGAATTTTGCTGAGTCTCAACTTGTAGCTAAGATGCCAAAGCAAGGGTGTGGGGAGATGAAGAAAAAAAAGAAAGTGAAGGTGACACTTGGTGCAGGTCCTGGTGATAGCAATAACCAGAATGGGTTGCAACCGGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTATGCAATGCATGTGGTGTTCGTTTCAAGTCTGGGAGGCTCTACCCGGAGTATCGCCCTGCTGCAAGCCCAACCTTTTGTCCATCTGTGCACTCCAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGAGGCATTGACAAATCTGGTTTTGCAATGAATGCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1065 0.5324 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAPTLPSVAAAAAGNCNSLASIWPAGSDSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVDEPSCTTTKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPAPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQANVISSKASSDSENFAESQLVAKMPKQGCGEMKKKKKVKVTLGAGPGDSNNQNGLQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSVHSNSHKKVLEMRCRGIDKSGFAMNAAASPELIPNTNSSLTLEYM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0977 354 PIRSF Txn_fac_GATA_plant 3 347 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu7g0977 354 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Pvu7g0977 354 Gene3D - 256 304 IPR013088 GO:0006355|GO:0008270
Pvu7g0977 354 PANTHER GATA TRANSCRIPTION FACTOR 1 354 - -
Pvu7g0977 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 317 - -
Pvu7g0977 354 PANTHER GATA TRANSCRIPTION FACTOR 8 1 354 - -
Pvu7g0977 354 MobiDBLite consensus disorder prediction 164 183 - -
Pvu7g0977 354 CDD ZnF_GATA 259 316 IPR000679 GO:0006355|GO:0043565
Pvu7g0977 354 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Pvu7g0977 354 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
Pvu7g0977 354 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0977 Pvu-Chr7 9922891 9926868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0977 19 322 C2C2-Gata Transcription Factor Family AT4G32890 38.339 1.07e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu7g0977 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0977 - - gmx:100815693 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0977 7 9922891 9926868 Pvu7g0977 7 9922891 9926868 ECH
Pvu4g0887 4 14763895 14768999 Pvu7g0977 7 9922891 9926868 PCT