Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0928 ATGGATCTAGAAGGAGGCTTATGTGCTAATAACTGCACAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGATTGCAAACAAATTTGTCCTCAGATCCCCCTTCTTTCTATGGTCTCGAAATTGAATCACCTTTTAATACATTCAACCCACCCTCTCCTCCAATCCAATCTGTACTTCCAGGTCAATCTAATACAGATATTGAGATCCCTGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCACTAAGCTTCAAGATTGGAATCCAAGTGCAATGTTGAACAATCTTTGCTTCCTTGAAGAAAAGATTCATCAGCTTCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCATGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGAAATCTTCTCCCCTCTGTTAGGCACACCCTCACAAATACAAATCCCTTGGTTGGCCAGATGGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTAGTGGTATTAGGCCACAAAATAGTAGTGGAAATAAACTGTTTGGTAAGTCCACTCCAAATGATCGACCAAATCCTTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCACATAAAGAAACTGGGTCTGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCTACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATACTTGCAGCAGATGTAACATGAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCACTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACATCAAAAGAGTGGCCGAGCCACCTGATCCCCAGAACAGAGAATGCAGCAATAAGGTAGGAAGTGTTAACTTCTGTTTTGGATCAAAGCTTTCAAGTGAAAATGGAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCGCTGAACTTCGAAGGTTGTAACTTTGGGGCGTTTAATGAATTCCCTCAAACTCCCTTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCTCCAAAATTTGGTGGCGGTGAATCAAGTACCGACAATCTGTAG 1539 0.4152 MDLEGGLCANNCTRSSSLTSPGNGLQTNLSSDPPSFYGLEIESPFNTFNPPSPPIQSVLPGQSNTDIEIPDQENCPLSDSSNTTKLQDWNPSAMLNNLCFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGNLLPSVRHTLTNTNPLVGQMDQLHGINLPFGSEPSSGIRPQNSSGNKLFGKSTPNDRPNPCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFLPLKTILCVKNHYKRTHCDKSYTCSRCNMKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDIKRVAEPPDPQNRECSNKVGSVNFCFGSKLSSENGVQNMMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFPQTPFEDSEGSFSFLMSGSFNYAPKFGGGESSTDNL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0928 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 495 - -
Pvu7g0928 512 MobiDBLite consensus disorder prediction 187 215 - -
Pvu7g0928 512 MobiDBLite consensus disorder prediction 180 216 - -
Pvu7g0928 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Pvu7g0928 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 495 IPR044300 GO:0010044|GO:0010447
Pvu7g0928 512 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Pvu7g0928 512 SMART c2h2final6 260 282 IPR013087 -
Pvu7g0928 512 SMART c2h2final6 347 369 IPR013087 -
Pvu7g0928 512 SMART c2h2final6 309 342 IPR013087 -
Pvu7g0928 512 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Pvu7g0928 512 Gene3D Classic Zinc Finger 244 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0928 Pvu-Chr7 9161700 9164821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0928 228 510 C2H2 Transcription Factor Family AT1G34370 68.166 1.84e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g0928 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0928 - - gmx:100170687 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0928 7 9161700 9164821 Pvu7g0928 7 9161700 9164821 ECH