Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0909 ATGGGTACGTTGAATCTACTCTTTTTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCTGCTGCGAAGGTGGTGCTTATTGGGAACAATATAACTCTATCCTTCGATGATATTGAAGCAAATTTTGCTCCAACAGTCAAAGGTTCTGGACAATATGGGGTCTTATATTTGGCGGAGCCACTTGATGCGTGTACAGAACTGACAAATAAAGTTGAACGACTTCTCAATGTGAGTTCACCTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAGAAAGTCAGAAGGGCACAAAAGGCTGGCTTCGAAGCTGTAATTGTCTATGACAATGAAGAAGACGGTGTCTTGGTTGCGATGGCAGGAAATTCTGCTGGGATAAGAATACATGCAGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGACTAATGTGGAAATATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTACTTGCAATGTCTGCTGTGCTGGCCACTTGTTTCTTTGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGGTTCTCTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTATTGGCGAGAAGATCAGGATTCTTCCCTGCTGTCACAAGTTTCATGCTATCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGAACCACCACCTTCAGAATCCACACCCTTGCTCTCGTCAAGCTCAGCAGCCTCTGTCTTATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACTGCTTCGCAGACCTCATCTATTTCTCGTAACCACTCCATTGCCAGCACACCTCATTTTCATCCATCACTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCATGAGCCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCGCATTCCATGGGGTATCCCTCTTTGCCATCCCTTAACTCAAGGTACATGTCTCCATATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCAGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1320 0.4394 MGTLNLLFFFSLVSLCAMAAAKVVLIGNNITLSFDDIEANFAPTVKGSGQYGVLYLAEPLDACTELTNKVERLLNVSSPFALVVRGGCSFEEKVRRAQKAGFEAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRGSLREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCIGEKIRILPCCHKFHAICVDSWLTSWRTFCPVCKRDARTGLTEPPPSESTPLLSSSSAASVLSSVRSSLASSSAIQIARTASQTSSISRNHSIASTPHFHPSLRSSYHQSPSLSMSRSSVDLRNASQRSLASHLNSPHSMGYPSLPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0909 439 Pfam PA domain 61 141 IPR003137 -
Pvu7g0909 439 CDD mRING-H2-C3H2C2D_ZSWM2 231 274 - -
Pvu7g0909 439 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 372 - -
Pvu7g0909 439 ProSiteProfiles Zinc finger RING-type profile. 232 274 IPR001841 -
Pvu7g0909 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 279 IPR013083 -
Pvu7g0909 439 Pfam Ring finger domain 231 274 IPR001841 -
Pvu7g0909 439 MobiDBLite consensus disorder prediction 336 382 - -
Pvu7g0909 439 Gene3D - 17 154 - -
Pvu7g0909 439 SUPERFAMILY RING/U-box 222 285 - -
Pvu7g0909 439 CDD PA_C_RZF_like 12 162 IPR044744 -
Pvu7g0909 439 SUPERFAMILY PA domain 75 161 IPR046450 -
Pvu7g0909 439 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 372 - -
Pvu7g0909 439 SMART ring_2 232 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0909 Pvu-Chr7 8931350 8936832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0909 20 438 C3H Transcription Factor Family AT1G22670 48.700 1.44e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0909 K15692 - gmx:100791248 714.916