Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0889 ATGTCTCAAACAGAGAATCCAATGGAAAATCTTCCGGCATTGATTTACAAAAACCCCATTAGGAGAAGTTCTAGACGATCTACAATGTATCTTGGCGTGAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGAAACCCTTATACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGAAGCTGCTATTGCCTATGATCTTTCATCTATCAAGATTTGTGGCATTAATGCTCGAACTAATTTTCATTACCCTTTTGTGTCTCTTCCACCACCTCCTATGGCGTTGCCTCCTCCACCGCTACCACCTACCCAGGAGTTGGATCAAAGTGTCGGAGTTTGTCCAGAGATGAATGCTGCTTTCGATGGCGATGATGAATCTCTGGTTATTGCTTCCATTTTGCAAAGCTTTTCTAGCTCTGGTAACTGCTCTTTTTAG 447 0.4318 MSQTENPMENLPALIYKNPIRRSSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSIKICGINARTNFHYPFVSLPPPPMALPPPPLPPTQELDQSVGVCPEMNAAFDGDDESLVIASILQSFSSSGNCSF* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0889 148 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pvu7g0889 148 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Pvu7g0889 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 8 139 - -
Pvu7g0889 148 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 139 - -
Pvu7g0889 148 CDD AP2 30 85 IPR001471 GO:0003700|GO:0006355
Pvu7g0889 148 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pvu7g0889 148 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pvu7g0889 148 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pvu7g0889 148 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pvu7g0889 148 Pfam AP2 domain 31 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0889 Pvu-Chr7 8592476 8593166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0889 30 87 AP2-EREBP Transcription Factor Family AT1G12890 77.586 1.50e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g0889 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0889 - - var:108324731 247.669