Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0880 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTGTCGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTTAGATTAGTTATTGACAGGGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTAGACGAAATCTTCAGGGTTACGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGACAAAGGGACTGACAGAAACAGAGAACAGGGTCGCGGTGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCTGCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCGGCTTTGGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCGCATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATCTCTGAGCTAAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTCCAGGCTCAAATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAAACCTCGCAGTCTTTAATGAATGAAGGTCAGCTGGTTCAGCCACCACTGGTTCAAAGTCTGCCTACCCTTCCTCCTCATGGGCAGAGCAAATTGCAGCCTGGTTTGATACCTTATGCTCAAGAAGGCCAAGTCAGCACCATACTTCATAATCCTCTGGCTTCTAATCAATTAACTGCTCATTCAAAGCTTCCAGCGCAGCCCCGAATTCCCCTTCAACAACATCCAAACAACCTTGTACTTCCTGGAACTTTGTCAGGACAGCCTAATTTATTGCTTCCTTCTGTGCGCCCAGGTTTGGGAAGTTTGTCTGTCAGGCCACCAATTCAACCCACAACTTCAACTGCTCTAAACCAGCAAATGCATACCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTTGGACATAATATTCAGTTGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCGCCATATCGTCATCTAATTCTCAGTTGTTGAGTAAAGGTGATAAATCTTCAAATATAACATATTCAAACATGCCTTTGGGAATAGAGAAAACAAACATGGTTCGTGATTCTTCAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGAAGAGGGAAGGAGTACACCTCTTTCTACTGGGATATCAGACGTGCCTGTCACTGATGGACCATCTCATGCCCTTGGAAGAAGCTCATTGCCTATACTTGCAGCTAATAAAGCAGAAGGGCAATACTCCGAGCAACAGTCTTCTCAGCTTCCTCCTGATGTGGAGTCTGTTTTGCTGCAACAAGTGTTGAATCTGACGCCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAACAGGCTCTTCGGCGTGATCAGATGCAGCCCTCATAA 1620 0.4623 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAVHGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLMNEGQLVQPPLVQSLPTLPPHGQSKLQPGLIPYAQEGQVSTILHNPLASNQLTAHSKLPAQPRIPLQQHPNNLVLPGTLSGQPNLLLPSVRPGLGSLSVRPPIQPTTSTALNQQMHTSLLQHSVHVGNSTVGHNIQLVRPDANFQPGPAISSSNSQLLSKGDKSSNITYSNMPLGIEKTNMVRDSSESFSRPSKLMKLEEGRSTPLSTGISDVPVTDGPSHALGRSSLPILAANKAEGQYSEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0880 539 MobiDBLite consensus disorder prediction 391 437 - -
Pvu7g0880 539 Pfam Transcription termination and cleavage factor C-terminal 501 533 IPR026896 GO:0031124
Pvu7g0880 539 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Pvu7g0880 539 MobiDBLite consensus disorder prediction 391 470 - -
Pvu7g0880 539 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 534 - -
Pvu7g0880 539 MobiDBLite consensus disorder prediction 83 111 - -
Pvu7g0880 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Pvu7g0880 539 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Pvu7g0880 539 Gene3D - 151 232 - -
Pvu7g0880 539 Gene3D - 492 538 IPR038192 -
Pvu7g0880 539 Gene3D - 1 117 IPR012677 -
Pvu7g0880 539 SMART rrm1_1 10 83 IPR000504 GO:0003723
Pvu7g0880 539 CDD RRM_CSTF2_CSTF2T 11 85 - -
Pvu7g0880 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0880 Pvu-Chr7 8532771 8539638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0880 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 3.07e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0880 K14407 - gmx:100806489 876.315