Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0871 ATGGCAGCAGCGGTTGTTTCCTCACCGATGACTCAGTCTGTGACTGCAACAGCGGCTCCGTCAACAGCATTGGGCGGAGGACCATTTTCGAATGCCTCGCTGTACGTGGGTGATCTCGATGGCAATGTGAATGAGGAGCAACTTTATGATCTTTTCAGTCAGGTTGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGAGCAAGCGATCCTCTCTCGGTTACGCTTATGTCAATTTTTCGACCGCTCAGGATGCATCCAATGCCATGGAACTTTTGAACTTCACTCCTGTTAATGGAAAACCGATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACATGGCAATGTGTTCATCAAAAACCTGGATACCTCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATACCGTTACTGGCCAGTCAAAAGGGTATGGATTTGTTCAGTTTGACAACGAAGATGCTGCTCAGAATGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTATGTTGGACTCTTTATTCGGCGTCAGGTTCGGACAAATGGATCACCCAAATTTACTAATGTCTATGTGAAAAATTTTTCTGAAACATTCACTGATGACGACCTTACTAAGTTATTTGGATCATATGGTACGATAACTAGTGCCACTCTCATGAAAGATATGAATGGGAAGTCTAGAGGTTTTGGTTTTGTAAATTTCCAGAGTCCAGATTCAGCAGCTGCTGCAGTTGAAGTGCTAAATGGCTCTACCATTGATGACAAGGTTTTATACGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCCGAGTTGAAAGCTAAAATTGAGCAAGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAGAAACTGAGAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTGGATTCAAATGGACATAGCAAGGGGTCTGGTTTTGTTGCTTTTTCTACTCCGGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCTCTTTATGTTGCTGTGGCACAACGTAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTGTATCATCCAGGGGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGCACCCCTGGCTTCATACCACCACAGCCTGCTGGATATTCATTCCAACAGCAAATTTTGCCTGGTATGCGGCCTGGATTTGCCCCCAATTTCATTACTCCTTACCACCTTCAAAGGCAGGGTCAGTCTGGACACAGGACAGGAGTTCGACGAAATGGAAACTTTCAACCGGTGCAACAGAACCAGCTGATGCTACATCGTAATTCCAACCAAGGGTTTCGATACATGTCTAATGGTCGAAATGGTCCAACTACTATGCACTTTGATGGTTCTGGAATTAATGCAGCACCTAATGATGGTCAGCGTTCTGGAGCAGTGTCTACTACACTTGCATCCGCTCTTGCATCTGCCACTCCAGAAAACCAACGCATGATGTTGGGGGAACATTTATACCCTCTTGTGGAGCGTCTCACATTAAACCAATACACAGCGAAGGTGACTGGAATGTTGCTGGAAATGGACCAGTCAGAAGTAATCAATCTCATTGAATCTCCTGAGGACCTGAAGACAAAGGTGTCTGAGGCAATGCAGGTATTGTATGAGGCTACACCTGATTCTGCAGTTGGTGATCAGATTGGATCATTGTCTGTGAATGAATGA 1911 0.4338 MAAAVVSSPMTQSVTATAAPSTALGGGPFSNASLYVGDLDGNVNEEQLYDLFSQVAQIVSIRVCRDQSKRSSLGYAYVNFSTAQDASNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDTVTGQSKGYGFVQFDNEDAAQNAIKQLNGMLINDKQVYVGLFIRRQVRTNGSPKFTNVYVKNFSETFTDDDLTKLFGSYGTITSATLMKDMNGKSRGFGFVNFQSPDSAAAAVEVLNGSTIDDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNEKLRDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHPGAPRLAPQQLYFGQGTPGFIPPQPAGYSFQQQILPGMRPGFAPNFITPYHLQRQGQSGHRTGVRRNGNFQPVQQNQLMLHRNSNQGFRYMSNGRNGPTTMHFDGSGINAAPNDGQRSGAVSTTLASALASATPENQRMMLGEHLYPLVERLTLNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLYEATPDSAVGDQIGSLSVNE* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0871 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Pvu7g0871 636 Pfam Poly-adenylate binding protein, unique domain 551 616 IPR002004 GO:0003723
Pvu7g0871 636 SMART rrm1_1 121 194 IPR000504 GO:0003723
Pvu7g0871 636 SMART rrm1_1 314 386 IPR000504 GO:0003723
Pvu7g0871 636 SMART rrm1_1 33 106 IPR000504 GO:0003723
Pvu7g0871 636 SMART rrm1_1 211 283 IPR000504 GO:0003723
Pvu7g0871 636 CDD RRM4_I_PABPs 312 390 - -
Pvu7g0871 636 SUPERFAMILY RNA-binding domain, RBD 31 201 IPR035979 GO:0003676
Pvu7g0871 636 Gene3D - 311 410 IPR012677 -
Pvu7g0871 636 SUPERFAMILY PABC (PABP) domain 497 621 IPR036053 GO:0003723
Pvu7g0871 636 CDD RRM2_I_PABPs 118 194 IPR045305 -
Pvu7g0871 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Pvu7g0871 636 PANTHER RNA BINDING PROTEIN 28 623 - -
Pvu7g0871 636 Coils Coil 282 310 - -
Pvu7g0871 636 Gene3D - 206 310 IPR012677 -
Pvu7g0871 636 PANTHER POLYADENYLATE-BINDING PROTEIN 28 623 - -
Pvu7g0871 636 SMART rrm2_1 314 386 IPR003954 GO:0003676
Pvu7g0871 636 SMART rrm2_1 121 194 IPR003954 GO:0003676
Pvu7g0871 636 SMART rrm2_1 33 106 IPR003954 GO:0003676
Pvu7g0871 636 SMART rrm2_1 211 283 IPR003954 GO:0003676
Pvu7g0871 636 CDD RRM1_I_PABPs 33 112 - -
Pvu7g0871 636 SMART poly_2 555 619 IPR002004 GO:0003723
Pvu7g0871 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Pvu7g0871 636 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 616 IPR006515 GO:0003723
Pvu7g0871 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Pvu7g0871 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Pvu7g0871 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Pvu7g0871 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Pvu7g0871 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 543 621 IPR002004 GO:0003723
Pvu7g0871 636 SUPERFAMILY RNA-binding domain, RBD 209 394 IPR035979 GO:0003676
Pvu7g0871 636 Gene3D - 27 118 IPR012677 -
Pvu7g0871 636 Gene3D - 119 205 IPR012677 -
Pvu7g0871 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Pvu7g0871 636 Gene3D - 541 620 - -
Pvu7g0871 636 CDD RRM3_I_PABPs 209 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0871 Pvu-Chr7 8395742 8399815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0871 31 625 Eukaryotic Initiation Factors Gene Family AT1G71770 56.585 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0871 K13126 - gmx:100783163 1063.52