Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0843 ATGATGTCACGTTTTATGCATGCGCCTTCTCCAGATTTGTCTCCTGCTCTTTTGGGTTCGGGCTCGGGCTCGGGTTCGGGCTGGGTTGGGCAGAAAAGAGCGCGTGAAGATGAGAGTAATGCTGCCGCGAGTGGGGGTGAGGGTGGTTCGTCACAGAGTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTATGGCTTGGCACCTTCGACACCGCCGAGGCTGCCGCCAGAGCTTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTACCGCGGTTCGACCTCCTCACCTTCCCAATTTTCCCGCCACCGCACTCGCAGGCTCAAGTGATGTTCCTGCAGTGACAGGCTATTCTCCGGCGGTGATGCAGGGAGCACCGTTTCAGAGCTCCTCTGATTTGCTTAGAGACTACTGGGGGTATTCTCTGCTGCTGCGGAGCACGGGGGATTTCCATGGACTCGAGCAGTGGTTCTATGATTCGCAAATGGCAGCGCTGCAATCTTCTTCATCGCCGTTACCGCCTGCGTATGCACCATCCTCTGCTTCCTTTCCTCTGTTTTCGAGCCAGCAAATGGGAGTTTTCCGGCCGCCGGGACAGCAGCCTCACGGCGGAGGAGACGGTGGTAGCGGGTCAGAGTTTCCACCTTCGTCGTGGTCAGATACCAGTGGTTATCCTCCTCCACCTCCACCACCTCTTTGA 807 0.5762 MMSRFMHAPSPDLSPALLGSGSGSGSGWVGQKRAREDESNAAASGGEGGSSQSASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTAVRPPHLPNFPATALAGSSDVPAVTGYSPAVMQGAPFQSSSDLLRDYWGYSLLLRSTGDFHGLEQWFYDSQMAALQSSSSPLPPAYAPSSASFPLFSSQQMGVFRPPGQQPHGGGDGGSGSEFPPSSWSDTSGYPPPPPPPL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0843 268 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Pvu7g0843 268 Pfam AP2 domain 65 114 IPR001471 GO:0003700|GO:0006355
Pvu7g0843 268 PANTHER DNA-BINDING DOMAIN 39 257 IPR044808 GO:0003700|GO:0009873
Pvu7g0843 268 CDD AP2 73 124 IPR001471 GO:0003700|GO:0006355
Pvu7g0843 268 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Pvu7g0843 268 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Pvu7g0843 268 MobiDBLite consensus disorder prediction 1 69 - -
Pvu7g0843 268 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 39 257 - -
Pvu7g0843 268 Gene3D AP2/ERF domain 64 124 IPR036955 GO:0003700|GO:0006355
Pvu7g0843 268 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Pvu7g0843 268 MobiDBLite consensus disorder prediction 224 268 - -
Pvu7g0843 268 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0843 Pvu-Chr7 8065792 8067856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0843 44 140 AP2-EREBP Transcription Factor Family AT2G33710 65.979 7.79e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g0843 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0843 - - gmx:100802242 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0981 4 24438791 24441164 Pvu7g0843 7 8065792 8067856 PCT