Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0822 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGCTTTGAGGTAAGGCTTCCTGGCCATAGCAGGGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCAGCGGTCATACAGAACAGCCGGTGGGCTAGCCTTCCCCCAGAGCTCCTTCGCGATGTTATTAATAGATTGGAAGCAAGTGAGAGTACATGGCCTGGTCGTAAGCATGTAGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAACTCTGTGGGAAGATTACTTTCCCTATCGCCCTGAAGCAGCCTGGGCATAGGAATGGAACCATCCAGTGTTTCATCAAGAGAGAGAAATCTAAGCTGACATACCATCTCTTCCTTTGCCTCAGTCCTGCCCTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAAAGGACCAGAAGAACAACATGCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACAAAGTTTATAATTTATGATACACAACCACCGTACAACAATGCTATGCTGTCCCCACCTGGGCGTAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAACATTGGTCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGACCCCGAAGGATGAATTGTACAATGTACTCAATTCCTGCATCATCTCTTGAGCCTAATGGCGTTGTCCCAGGGCAGCCAGAGCTCCTTTCCCACCCCCTTGAGGATTCTTTCCGAAGTATCTCCTTCTCAAAATCAATTGACAATTCAACCCGGTTTAGCAGCTCTAGGTTCTCAGACATAATGGGAACCGGCAGTGAAGACCAGGAGGGAAAGGTTGTACCATTAGTTCTGAAGAACAAGTCCCCAAGGTGGCATGAACAGCTTCAGTGTTGGTGCCTTAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTAAAGAATTTTCAGCTGATTGCTGCGACATCGATGACAGCCCCAGCCCCTATAGGATCAGGACCTACACTATCCCACCCACCACAGTCTTCTTCTTCTGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGCTACCCTCTATCTGCATTTCAGGCTTTTGCTATATGCTTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1296 0.4699 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHSRGKSRSSVHELQEQPAVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPELCGKITFPIALKQPGHRNGTIQCFIKREKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIGQVTYELNVLGTRGPRRMNCTMYSIPASSLEPNGVVPGQPELLSHPLEDSFRSISFSKSIDNSTRFSSSRFSDIMGTGSEDQEGKVVPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSMTAPAPIGSGPTLSHPPQSSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0822 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Pvu7g0822 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Pvu7g0822 431 Gene3D Tubby Protein; Chain A 113 425 IPR025659 -
Pvu7g0822 431 Gene3D - 48 105 - -
Pvu7g0822 431 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Pvu7g0822 431 PANTHER TUBBY-RELATED 1 431 - -
Pvu7g0822 431 Pfam Tub family 114 426 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Pvu7g0822 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Pvu7g0822 431 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 431 - -
Pvu7g0822 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Pvu7g0822 431 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0822 Pvu-Chr7 7667439 7671240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0822 1 431 TUB Transcription Factor Family AT1G76900 68.192 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu7g0822 Tub 5.1e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0822 K19600 - gmx:100810531 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1013 4 26005465 26010088 Pvu7g0822 7 7667439 7671240 PCT