Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0680 ATGTTTTCCACCGACCCGCAAACGACCTCGCCGGTGTTGGGAGGTTCCCGACCGGCGCTGTCGAACGAAGAGGTGTTTCTGGCGGCCAGGCACCCCAAGAAACGCGCGGGGAGGAAGAAGTTCCGGGAGACGCGTCACCCGGTGTACCGCGGCGTCAGGCGGAGGGACTCCGGTAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGACCAGGATTTGGCTGGGGACCTTTCTCACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTCGCGCTTAGGGGAAGGTCGGCCTGTCTCAATTTCGCCGACTCCGCGAATCGGTTGCCGGTTCCGGCGACATTGGATCCCCGGGACATTCAGAAGGCGGCGGCACAGGCTGCAGAGGCGTTTCGACCTGGTAATGAATCGGGAAAGGATGATGATGCGGTGGTAGAAACGGTGGCGACAGCGACGGGGCATGATGAAGAAGAAGGGATGGAGTATCTGAGGAATATGGTTCTGATGTCGCCAACCCATTGCTTTGAGAGTGATGAATACGGAAGTACTGAAATGGAATTTGAGGACATTGAAGTTTCGTTGTGGAGTTATTCACTTTAA 606 0.5858 MFSTDPQTTSPVLGGSRPALSNEEVFLAARHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFLTAEMAARAHDVAALALRGRSACLNFADSANRLPVPATLDPRDIQKAAAQAAEAFRPGNESGKDDDAVVETVATATGHDEEEGMEYLRNMVLMSPTHCFESDEYGSTEMEFEDIEVSLWSYSL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0680 201 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Pvu7g0680 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 200 IPR045277 GO:0003700
Pvu7g0680 201 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Pvu7g0680 201 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Pvu7g0680 201 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 12 200 - -
Pvu7g0680 201 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Pvu7g0680 201 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Pvu7g0680 201 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Pvu7g0680 201 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Pvu7g0680 201 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0680 Pvu-Chr7 5928454 5929059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0680 20 199 AP2-EREBP Transcription Factor Family AT1G63030 53.723 5.99e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g0680 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0680 - K09286 gmx:100101894 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1292 4 39326716 39327951 Pvu7g0680 7 5928454 5929059 ECH
Pvu7g0680 7 5928454 5929059 Pvu7g0680 7 5928454 5929059 ECH
Pvu4g1292 4 39326716 39327951 Pvu7g0680 7 5928454 5929059 PCT