Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0671 ATGGTGAGGGGAAAGGTTCAAATGAAAAAAATTGAGGATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTAGAAATGGTCTTCTAAAGAAAGCTTATGAGCTATCAGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCGCCCAGAATGGAAGGCTCTATGAGTTCTCAAGTTGCGACATGTCAAAGATTTTGGAACGATACAGTCAATATACGAAGGATGTTCCTGCGAATAAACTTGGAGACGATTATATTCAGAATCTGGAGAGGAGAAGGACTCTCTTTGTGTGGGAATCTAGTCAAGATGAACAATTCTTGGTGGTTGGATAA 333 0.4054 MVRGKVQMKKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFAQNGRLYEFSSCDMSKILERYSQYTKDVPANKLGDDYIQNLERRRTLFVWESSQDEQFLVVG* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0671 110 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu7g0671 110 PANTHER MADS BOX PROTEIN 1 80 - -
Pvu7g0671 110 PANTHER MADS-BOX PROTEIN SOC1 1 80 - -
Pvu7g0671 110 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Pvu7g0671 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu7g0671 110 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pvu7g0671 110 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu7g0671 110 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu7g0671 110 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu7g0671 110 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu7g0671 110 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Pvu7g0671 110 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0671 Pvu-Chr7 5847170 5851242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0671 1 75 MADS-box Gene Family AT5G62165 80.000 9.95e-42 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g0671 SRF-TF 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0671 - - pvu:PHAVU_007G065600g 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0671 7 5847170 5851242 Pvu7g0671 7 5847170 5851242 ECH