Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0657 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAATTTTCTAATGGTCTCCAACCGCAACACAAAATCTCTAAAGATCTCCTCCTGGATGATCACAATATCGATAATTCTCCCCTTGTCGCTTATTCAGATAAAAAATTGCGTACTAGCCACCCCAACAAACTTTTTTATGCGCCTGAAACCAGTCACGAAAATTCTACCCAAGAAGAATCTGCAAAAAAGATGGTTCACAGAGAGATTGAGAGGAAAAGGAGGCAAGAAATGGCAACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTTCCTTCATCAAGGGAAAGCGTTCCATATCTGATCAAATGAGCGAGACAGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAGTTGAGTGACAAGAGGGATAAGCTGAAGAAGAAACTTCCCATAAACTCCACCCTCGAAAGCCGTCAGAACAAGCATGAATCTAGTGGTTTCACTGTCCACCAAAATAGTAGTGGAGCTGTGGGGATTGAGATCAGTGGATTCAGTGAGGAAGGGGTTTCACTTTCTAAATTGCTGGAACTAGTGTTAGAAGAGGGACTTGAAGTTGTTTGCTGTCTTTCAACTAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGGTTGAAAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGAAAATTCTCCAATGTAATTGCATCATTTAGAGTTTCTGAATAA 738 0.4133 MFPLQRGNELVIQFSNGLQPQHKISKDLLLDDHNIDNSPLVAYSDKKLRTSHPNKLFYAPETSHENSTQEESAKKMVHREIERKRRQEMATLHASLRSLLPLSFIKGKRSISDQMSETVNYINHLQKNIKELSDKRDKLKKKLPINSTLESRQNKHESSGFTVHQNSSGAVGIEISGFSEEGVSLSKLLELVLEEGLEVVCCLSTKVNGRLLHSLQCEVENSDSVDLSELRRKFSNVIASFRVSE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0657 245 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Pvu7g0657 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Pvu7g0657 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 243 IPR015660 GO:0003700|GO:0006357
Pvu7g0657 245 CDD bHLH_AtORG2_like 74 133 - -
Pvu7g0657 245 Coils Coil 122 142 - -
Pvu7g0657 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 145 IPR036638 GO:0046983
Pvu7g0657 245 SMART finulus 79 131 IPR011598 GO:0046983
Pvu7g0657 245 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 243 - -
Pvu7g0657 245 Gene3D - 64 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0657 Pvu-Chr7 5660789 5661887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0657 78 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.818 1.61e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g0657 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0657 - - pvu:PHAVU_007G064300g 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0657 7 5660789 5661887 Pvu7g0657 7 5660789 5661887 ECH
Pvu4g1315 4 39887949 39889639 Pvu7g0657 7 5660789 5661887 PCT