Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0619 ATGGACACGCCGGATAGGAGCAAGATCAACACCCCTCTTTCCCAGTTTGAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAGTCTGTTCACATTACTCAGACCTTCAATTCGCTCAGCTTTTCATCCCCTCCTTCTGTTTTCACATCACCCCATGTCAACTGTCACAGGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGACGCATCCAAACCCAAGGGTTCATCTGAAGATATAAATAATGTTTATTTATGTGAAAAGACTCCAGCAGATTCATCTCAGCCATGTCATGAATCAAGTGAGCCGCAGGAAAATACCAATCCAAATATTTCCATAAGAGATGCCTCAAACGAGCTATGTAATGAAAACCCAAATATCTCAGTTGAGGTCCCACAAGGCCTAAAATATAATTTGGCTAGCCCAGGGTATGATCCTGTGATCTCTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCGGGCAAGCCAGGATCAGATGTTGCCTATGTTCCAGATGACTCTGAAAAGAATTCAATTGAGGGTGAAATGCATCCTCCAGGGTTATGTCAAAATGAGGAAAAAATTGAAGGCCCGGATTGTGGTGTGGATGATTTAATTACTGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATTTGACAGAAGCTTTTAAGGATATAAATAAACAATTAAATCCTTCTACAAAGCTTACCAATTTTAGGACTTTGTTACAACAATCTGCCACCAATGATGGTCAACAAATGCACATTGTTGATGCAGTTGCTTCTGGTTCAGAACATGAAATTGAAAATCATCCTTGTGAACCTGGAGCAGCCACAGACACAGTTCAGAGACAGGACAATCATAGCAATGTTGCTTTGGTGGCTAGCAATCCAACTGAGAAAATGGATGATAAGCTTCTTTATGTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAGATGGCCAGTGTGCAAAGGAAGAACCTAGATGGTAAATCACACACCAATTCTAGTACAGAAAAGTCTGATGAGATGGATGTTAGTAAAGGAAAGCAAGTGCTCCCCATAAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCACTTGCAACCTTAAATGATTGCAAAAACATAAAAATTGAGAAGTTGCTAGCTGGAAGGCAACCTAACATGCCCAGCTCCTCTTCATCCGTGCAACTTTCTGCAAGCCAAGAACATCAACTAGCGTTGGTGCCTGCATCAGTGGAAAAAGATTTGGAGCCATCAGAGAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGCTTCTCATGGCTGGTGAAGATTTCCAGCAGAATAGTCCAAAAAGGAAAAGGCGCAGGTTAGAACCAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTAAAGCTTTATTGTGAGTGCTTTGCTGCGGGAGTCTACTGCATAGAGCCATGTTCATGTCGTGATTGCTTCAACAAGCCTATTCATGTTGATACCGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGTGCCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCTTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCCTTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGATGGAAAATGCTTCACATAAAACTGAAACACAGAATATTGAAAACCATCCAGACCATGCTCTTCCTACAACACCATTACGTATTTCCAGATCATTGCTCCCATTACCCTTTTCATCAAAGGGCAAGCCACCGAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTGAGCCAAAAGCTCGGGAAATCAAGTGCTCCGCGGTCTCAACCTAAATTTGACAAGCCTTTACAAACTGTTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATTTTACAATCTATCCCTTCCTTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2316 0.4292 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKPKGSSEDINNVYLCEKTPADSSQPCHESSEPQENTNPNISIRDASNELCNENPNISVEVPQGLKYNLASPGYDPVISADEADSLLELPGKPGSDVAYVPDDSEKNSIEGEMHPPGLCQNEEKIEGPDCGVDDLITEASDLLMFSPPNLTEAFKDINKQLNPSTKLTNFRTLLQQSATNDGQQMHIVDAVASGSEHEIENHPCEPGAATDTVQRQDNHSNVALVASNPTEKMDDKLLYVTHRGIRRRCLDFEMASVQRKNLDGKSHTNSSTEKSDEMDVSKGKQVLPIKHSGDSRKCVLPGIGLHLNALATLNDCKNIKIEKLLAGRQPNMPSSSSSVQLSASQEHQLALVPASVEKDLEPSENEVQPGEDCTQPLLLMAGEDFQQNSPKRKRRRLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVPSGIEAKPEEETEACEKGVMENASHKTETQNIENHPDHALPTTPLRISRSLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFDKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0619 771 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 484 519 IPR005172 -
Pvu7g0619 771 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 570 605 IPR005172 -
Pvu7g0619 771 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 766 - -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 757 771 - -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 694 771 - -
Pvu7g0619 771 SMART CXC_2 481 522 IPR033467 -
Pvu7g0619 771 SMART CXC_2 567 608 IPR033467 -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 97 119 - -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 464 482 - -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 461 482 - -
Pvu7g0619 771 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 766 IPR044522 GO:0003700
Pvu7g0619 771 ProSiteProfiles CRC domain profile. 482 607 IPR005172 -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 718 742 - -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 338 361 - -
Pvu7g0619 771 MobiDBLite consensus disorder prediction 338 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0619 Pvu-Chr7 5214830 5220645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0619 10 766 CPP Transcription Factor Family AT3G22780 42.085 1.07e-154 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pvu7g0619 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0619 - - var:108326442 1399.8