Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0557 ATGTCACCCGTTCAAATCTCCAATTGCATTTCTCACCCTCTCTTTTCTTTCTCGCACCAGACAGAGCAAACACTCTGTTCTCAGAACCTTCCTTTGCTTTTTCTCTCGTTCATGGAGCTCCAGAGGCGCCAGGATCAGAGTCTCTCCCAGCGGAAGGGGCAGAAGCGGAAGCTCGACGATGAACATCACGACGAGGGGCAGATCTCGGCGGCGCCGCCCACCGCCGACGAGCGAGCGGCGCTCCTCTACGACGTTGCCGAACAGGTGAGCGTCCTCGAGTCGACTTTCACGTGGAACGAAGTGGATCGATCCGCGGCCAAACGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGGCGTTGGTGAAGCATCTTCAGGCGCCGCCTCTGGTTGACCGTGTCGAGAAGCCATTGCCGTTCGAGCACGAGGTTGAGAAGGGGAGCGCTTTCGCACTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTCATTGTTGACAGTGGTGCCTTAATACATCTTGTTGATCTTTTAAAGAGGCACAAGGACGGCTTAACGTCCCGTGCTATTAATAGTCTTATTCGTAGGGCTGCGGATGCAATTACTAATCTTGCTCATGAAAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCTGATGCAAAGGTTCAAAGAGCAGCTGCTGGTGCTCTACGAACTCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTTTAATGCTACGTTCTGAAGACGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTGCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAGCCAGTTATTGGATTACTCAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCAACCTTTGATAGAAATGCTTCAGTCATCTGATGTACAACTCAGGGAAATGTCCGCTTTCGCTTTGGGAAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAATGGTGGCTTAGTGCCATTACTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGACAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGGCTGCAAGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCAGGGCCGTGTGCTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGGCGAGTTGCTTTGGCTCTTGCGCATCTTTGTTCTGCAGATGATCAGAGAAAAGTTTTTATTGATCACTACGGTCTTGAGTTGCTTATCGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCATCAACCTTGTCTCCTATTGATGCTCCTCCTCTTTCTCCAACGCCACAGGTATATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACAATTTTATGCACATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGACGGTGGCTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTCGAGTTGATGATGAGATTTGTGTATTGTGGATCAGTTGATGTCACACTGGATATTGCTCAAGATCTTCTTCGAGCAGCCGATCAATATCTTTTGGAAGGACTTAAGAGGCTCTGTGAGTACACAATTGCACAGGATATATCACTAGAAAATGTTTCAAGTATGTACGAACTTTCAGAAGCCTTCAATGCAGTACCACTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGACAAATTGAGTGCGAGGCCAGGGCATTCTCTTCTGATTCAGCGTGTAATACCAGAGATCCGCAATTACTTTGTTAAAGCACTTACAAAGGCCAACTCCCATAACAACCGACTGTAG 2232 0.4592 MSPVQISNCISHPLFSFSHQTEQTLCSQNLPLLFLSFMELQRRQDQSLSQRKGQKRKLDDEHHDEGQISAAPPTADERAALLYDVAEQVSVLESTFTWNEVDRSAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLVDRVEKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKDGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSSDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIQGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKVFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPIDAPPLSPTPQVYLGEQYVNNATLSDVTFLVEGKQFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAVPLRHACILFILEQFDKLSARPGHSLLIQRVIPEIRNYFVKALTKANSHNNRL* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0557 743 CDD BTB_POZ_ARIA_plant 563 678 - -
Pvu7g0557 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 317 IPR000225 GO:0005515
Pvu7g0557 743 Gene3D Potassium Channel Kv1.1; Chain A 565 702 IPR011333 -
Pvu7g0557 743 SMART arm_5 119 171 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 348 388 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 504 544 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 172 220 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 222 262 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 306 346 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 264 304 IPR000225 GO:0005515
Pvu7g0557 743 SMART arm_5 389 429 IPR000225 GO:0005515
Pvu7g0557 743 SUPERFAMILY POZ domain 568 670 IPR011333 -
Pvu7g0557 743 Gene3D - 453 558 IPR011989 -
Pvu7g0557 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Pvu7g0557 743 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 42 739 IPR044282 -
Pvu7g0557 743 SUPERFAMILY ARM repeat 100 447 IPR016024 -
Pvu7g0557 743 Gene3D - 77 243 IPR011989 -
Pvu7g0557 743 MobiDBLite consensus disorder prediction 45 67 - -
Pvu7g0557 743 Pfam BTB/POZ domain 569 671 IPR000210 GO:0005515
Pvu7g0557 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Pvu7g0557 743 SUPERFAMILY ARM repeat 471 649 IPR016024 -
Pvu7g0557 743 SMART BTB_4 576 673 IPR000210 GO:0005515
Pvu7g0557 743 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 42 739 - -
Pvu7g0557 743 Gene3D - 244 452 IPR011989 -
Pvu7g0557 743 ProSiteProfiles BTB domain profile. 576 643 IPR000210 GO:0005515
Pvu7g0557 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 233 IPR000225 GO:0005515
Pvu7g0557 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 130 184 IPR000225 GO:0005515
Pvu7g0557 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 233 268 IPR000225 GO:0005515
Pvu7g0557 743 MobiDBLite consensus disorder prediction 45 73 - -
Pvu7g0557 743 Pfam Armadillo/beta-catenin-like repeat 264 303 IPR000225 GO:0005515
Pvu7g0557 743 Pfam Armadillo/beta-catenin-like repeat 348 387 IPR000225 GO:0005515
Pvu7g0557 743 Pfam Armadillo/beta-catenin-like repeat 229 261 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0557 Pvu-Chr7 4429646 4439041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0557 235 543 U-box Gene Family AT3G46510 25.806 3.31e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu7g0557 BTB 1e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0557 - - gmx:100784348 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0557 7 4429646 4439041 Pvu7g0557 7 4429646 4439041 ECH
Pvu2g0489 2 4382397 4393303 Pvu7g0557 7 4429646 4439041 PCT