Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0552 GCATGGCATGGAAGGCAAAGACAAAGGGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAAAAAATATTCAGATTTTGAGCCATTGGAAGATTCTGAAGCTGATTTACCAGAGTCAGATGCTTTAAAGAATGGAATTTCTAAGGATTCACCTGTTGATGAAGATATGGATATGATGGATTCTGATCATAATGGGGATTCCAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCGTCTATACTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATCGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGATGGTCGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTCAATGTTTTATTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTGGATGAAGGTCATCGGTTGAAAAACCACGAGTCTGCTCTGGCAAGAACCTTGGACAATGGCTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCCCTCACTGATGAGGAACAACTATTGATCATCCGCCGTCTGCATCAAGTAATAAGGCCTTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCGGCTTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGGTTGGATAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGATTATGATATGTATAATCGAAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTTGAAATTTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCGGAGTCCCCATTCTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAACCCGCAAATGGATCAACAAGCCGAGGACAGAGCACATCGCATTGGACAGAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAGGAGGTGATTCTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAGCACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGGGAAGACATGTCAAAGTTTTCTGGAAAAGGAAAAAGAAGAGACCACCTCTCATCTGACAGCATTGCACAAGCCAGTGATAGCACAGTAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTATGGCAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCAAAGAGATTCAAATCTGAAGGAACAAATTTCCTGAAAAATGCATACGAAGATGTTGGAACTGGTTTGAACCACCACATGTTATCATGGAATACCCACAAAAAGAAGAGGTCAAGTTTTCTTGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCAAACGGAAGAGCAAACTGGAACTGA 2541 0.4109 AWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDFEPLEDSEADLPESDALKNGISKDSPVDEDMDMMDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPESPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDMSKFSGKGKRRDHLSSDSIAQASDSTVVAEESLELRTESVPMANDRTSEDSFHVTPSKRFKSEGTNFLKNAYEDVGTGLNHHMLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0552 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 622 IPR027417 -
Pvu7g0552 846 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 322 IPR014001 -
Pvu7g0552 846 CDD SF2_C_SNF 446 579 - -
Pvu7g0552 846 MobiDBLite consensus disorder prediction 730 752 - -
Pvu7g0552 846 MobiDBLite consensus disorder prediction 826 846 - -
Pvu7g0552 846 SMART ultradead3 140 333 IPR014001 -
Pvu7g0552 846 MobiDBLite consensus disorder prediction 64 115 - -
Pvu7g0552 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 369 IPR027417 -
Pvu7g0552 846 Gene3D - 113 368 IPR038718 -
Pvu7g0552 846 Pfam Snf2-ATP coupling, chromatin remodelling complex 662 721 IPR029295 GO:0042393
Pvu7g0552 846 Pfam Helicase conserved C-terminal domain 455 568 IPR001650 -
Pvu7g0552 846 Coils Coil 659 679 - -
Pvu7g0552 846 MobiDBLite consensus disorder prediction 91 113 - -
Pvu7g0552 846 Gene3D - 375 675 IPR027417 -
Pvu7g0552 846 Pfam SNF2-related domain 147 435 IPR000330 GO:0005524|GO:0140658
Pvu7g0552 846 MobiDBLite consensus disorder prediction 730 746 - -
Pvu7g0552 846 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 625 IPR001650 -
Pvu7g0552 846 SMART helicmild6 484 568 IPR001650 -
Pvu7g0552 846 PANTHER SNF2/RAD54 HELICASE FAMILY 3 781 - -
Pvu7g0552 846 SMART SnAC_2 661 721 IPR029295 GO:0042393
Pvu7g0552 846 PANTHER ATP-DEPENDENT HELICASE BRM 3 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0552 Pvu-Chr7 4406116 4410663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0552 451 596 RAD5 or RAD16-like Gene Family AT5G43530 37.333 1.78e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu7g0552 SNF2_N 2.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0552 - - pvu:PHAVU_007G054000g 1680.23